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WormBase Tree Display for CDS: CJA08478a

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Name Class

CJA08478aEvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig17241
StructureSource_exons (14)
DB_infoDatabaseTREEFAMTREEFAM_IDTF316171
DB_remarkCJP-VAV-1 protein; contains similarity to Pfam domains PF00017 (SH2 domain), PF00130 (Phorbol esters/diacylglycerol binding domain (C1 domain)), PF00169 (PH domain), PF00307 (Calponin homology (CH) domain), PF00621 (RhoGEF domain), PF07653 (Variant SH3 domain); contains similarity to Interpro domains IPR000219 (Dbl homology (DH) domain), IPR036872 (CH domain superfamily), IPR035899 (Dbl homology (DH) domain superfamily), IPR001849 (Pleckstrin homology domain), IPR036860 (SH2 domain superfamily), IPR001452 (SH3 domain), IPR011993 (PH-like domain superfamily), IPR036028 (SH3-like domain superfamily), IPR001715 (Calponin homology domain), IPR002219 (Protein kinase C-like, phorbol ester/diacylglycerol-binding domain), IPR000980 (SH2 domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
Isoform
VisibleGeneWBGene00127682
Corresponding_transcriptCJA08478a.1
Corresponding_proteinJA44592
Corresponding_oligo_setGPL14145_CJA08478_2199-2258_0.694_269_A
GPL14145_CJA08478_2464-2523_0.885_15_C
GPL14145_CJA08478_2902-2961_0.642_349_B
Matching_cDNAjaponica_GG4292|c1_g1_i2Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA08478_2199-2258_0.694_269_A
GPL14145_CJA08478_2464-2523_0.885_15_C
GPL14145_CJA08478_2902-2961_0.642_349_B
RNASeq_FPKMWBls:000000422.7826From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002710.8227From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000381.78298From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
3.94739From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:000004111.3414From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
16.9554From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
18.096From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
2.03305From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
2.84193From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
3.14853From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
3.27794From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
8.92737From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
Remarkbased on Augustus prediction Cjap.Contig17241.g15181.t2[100726 mh6]
Methodcurated