WormBase Tree Display for Gene: WBGene00127682

WBGene00127682 SMap: S_parent: Sequence: Cjap.Contig17241
  Identity: Version: 2
    Name: CGC_name: Cjp-vav-1 From_analysis: Inferred_from_orthology
      Sequence_name: CJA08478
      Molecular_name: CJA08478a
        CJA08478a.1
        JA44592
        CJA08478b
        JA39653
        CJA08478b.1
      Public_name: Cjp-vav-1
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:21 WBPerson4055 Event: Imported: from NGASP
              Name_change: CGC_name: Cjp-vav-1
        2 29 Jul 2011 11:13:37 WBPerson4055 Event: Imported: Augustus import
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: vav
    RNASeq_FPKM: WBls:0000004 28.3129 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 10.823 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 7.08579 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
        7.42107 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        7.75635 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
      WBls:0000041 13.3629 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        16.2458 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        17.0069 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        18.0967 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        2.5435 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        2.84195 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        3.14855 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        4.03403 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        8.69847 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        9.66004 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
      WBls:0000101 10.0968 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
        7.75635 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
    GO_annotation: 00193394
    Ortholog (36)
    Paralog: WBGene00122877 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00126129 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00129233 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00130810 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00131668 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00137899 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00182741 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00218818 Caenorhabditis japonica From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable guanyl-nucleotide exchange factor activity. Is an ortholog of C. elegans vav-1. In C. elegans, vav-1 is involved in several processes, including negative regulation of Notch signaling pathway; positive regulation of nematode male tail tip morphogenesis; and regulation of vulval development. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA08478a
      CJA08478b
    Corresponding_transcript: CJA08478a.1
      CJA08478b.1
    Other_sequence (14)
  Experimental_info: Expr_pattern: Expr1080908
    Microarray_results: GPL14145_CJA08478_2199-2258_0.694_269_A
      GPL14145_CJA08478_2464-2523_0.885_15_C
      GPL14145_CJA08478_2902-2961_0.642_349_B
  Method: Gene