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WormBase Tree Display for CDS: CJA10029a

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Name Class

CJA10029aSMapS_parentSequenceCjap.Contig17643
StructureSource_exons13
441785
47294832
64406800
68657035
70827189
72347383
1002310562
1084910969
1333113515
DB_infoDB_remarkCJP-TIAM-1 protein; contains similarity to Pfam domain PF00621 (RhoGEF domain); contains similarity to Interpro domains IPR000219 (Dbl homology (DH) domain), IPR035899 (Dbl homology (DH) domain superfamily), IPR043537 (Tiam1/Tiam2/Protein still life)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00129233
Corresponding_transcriptCJA10029a.1
Corresponding_proteinJA47879
Corresponding_oligo_setGPL14145_CJA10029_825-884_0.895_14_A
GPL14145_CJA10029_899-958_0.903_7_C
GPL14145_CJA10029_1550-1609_0.799_84_B
GPL14145_CJA27731_420-479_0.571_57_B
GPL14145_CJA27731_549-608_0.915_5_C
GPL14145_CJA27731_566-625_0.940_1_A
Matching_cDNAjaponica_GG7322|c0_g2_i1Inferred_automaticallytranscript_builder.pl
japonica_GG12636|c0_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA10029_1550-1609_0.799_84_B
GPL14145_CJA10029_825-884_0.895_14_A
GPL14145_CJA10029_899-958_0.903_7_C
GPL14145_CJA27731_420-479_0.571_57_B
GPL14145_CJA27731_549-608_0.915_5_C
GPL14145_CJA27731_566-625_0.940_1_A
RNASeq_FPKMWBls:00000045.2354From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000270.000173From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380.000226From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
0.000809From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.000175From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
0.00018From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
0.412692From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
0.443414From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
0.557895From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
0.770571From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0.879704From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
0.914606From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
Remarkbased on Augustus prediction Cjap.Contig17643.g19246.t1[100726 mh6]
Methodcurated