WormBase Tree Display for Gene: WBGene00129233

WBGene00129233 SMap: S_parent: Sequence: Cjap.Contig17643
  Identity: Version: 8
    Name: CGC_name: Cjp-tiam-1 From_analysis: Inferred_from_orthology
      Sequence_name: CJA10029
      Molecular_name: CJA10029a
        CJA10029a.1
        JA47879
        CJA10029b
        JA56005
        CJA10029b.1
      Other_name: Cjp-cgef-2 From_analysis: Inferred_from_orthology
      Public_name: Cjp-tiam-1
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:21 WBPerson4055 Event: Imported: NGASP import
        2 18 Aug 2010 13:59:01 WBPerson2970 Name_change: CGC_name: Cjp-cgef-2
        3 29 Jul 2011 11:13:37 WBPerson4055 Event: Imported: Augustus import
        4 16 Apr 2013 15:57:56 WBPerson2970 Name_change: CGC_name: Cjp-tiam-1
                Other_name: Cjp-cgef-2
        5 08 Feb 2019 15:42:27 WBPerson1983 Name_change: CGC_name: Removed
        6 08 May 2019 10:09:25 WBPerson1983 Name_change: CGC_name: Cjp-tiam-1
        7 28 May 2021 19:05:20 WBPerson1983 Name_change: CGC_name: Removed
        8 28 Jul 2021 11:12:29 WBPerson1983 Name_change: CGC_name: Cjp-tiam-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tiam
    RNASeq_FPKM: WBls:0000004 5.27004 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 3.0078 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 1.71263 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
        2.10384 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        2.49506 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
      WBls:0000041 0.812346 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        0.858977 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        0.869574 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        0.918836 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        0.951497 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        0.984159 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        1.09757 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        1.40903 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        1.4537 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        1.47398 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
      WBls:0000101 1.40903 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
        1.63586 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
    GO_annotation: 00194650
      00194651
      00194652
    Ortholog (32)
    Paralog: WBGene00138393 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00130810 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00215416 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00122877 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00126129 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00127682 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00131668 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00137899 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00182741 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00218818 Caenorhabditis japonica From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in small GTPase mediated signal transduction. Is an ortholog of C. elegans tiam-1. In C. elegans, tiam-1 is involved in small GTPase mediated signal transduction. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA10029a
      CJA10029b
    Corresponding_transcript: CJA10029a.1
      CJA10029b.1
    Other_sequence (33)
  Experimental_info: Expr_pattern: Expr1078651
      Expr1081513
    Microarray_results: GPL14145_CJA10029_1550-1609_0.799_84_B
      GPL14145_CJA10029_825-884_0.895_14_A
      GPL14145_CJA10029_899-958_0.903_7_C
      GPL14145_CJA27731_420-479_0.571_57_B
      GPL14145_CJA27731_549-608_0.915_5_C
      GPL14145_CJA27731_566-625_0.940_1_A
  Remark: [190208 pad] The CGC name Cjp-tiam-1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [210528 pad] The CGC name Cjp-tiam-1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene