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WormBase Tree Display for CDS: CJA10029b

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Name Class

CJA10029bSMapS_parentSequenceCjap.Contig17643
StructureSource_exons160
305649
45934696
63046664
67296899
69467053
70987247
988710426
1071310833
1319513379
DB_infoDatabaseTREEFAMTREEFAM_IDTF332360
DB_remarkCJP-TIAM-1 protein; contains similarity to Pfam domain PF00621 (RhoGEF domain); contains similarity to Interpro domains IPR000219 (Dbl homology (DH) domain), IPR035899 (Dbl homology (DH) domain superfamily), IPR043537 (Tiam1/Tiam2/Protein still life)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Isoform
VisibleGeneWBGene00129233
Corresponding_transcriptCJA10029b.1
Corresponding_proteinJA56005
Corresponding_oligo_setGPL14145_CJA10029_825-884_0.895_14_A
GPL14145_CJA10029_899-958_0.903_7_C
GPL14145_CJA10029_1550-1609_0.799_84_B
GPL14145_CJA27731_420-479_0.571_57_B
GPL14145_CJA27731_549-608_0.915_5_C
GPL14145_CJA27731_566-625_0.940_1_A
Microarray_resultsGPL14145_CJA10029_1550-1609_0.799_84_B
GPL14145_CJA10029_825-884_0.895_14_A
GPL14145_CJA10029_899-958_0.903_7_C
GPL14145_CJA27731_420-479_0.571_57_B
GPL14145_CJA27731_549-608_0.915_5_C
GPL14145_CJA27731_566-625_0.940_1_A
RNASeq_FPKMWBls:00000040.034638From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000273.00763From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000381.7124From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
2.49425From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.039132From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
0.311678From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
0.446285From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
0.539098From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
0.63846From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0.812167From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
0.983984From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
1.03057From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
Remarkbased on Augustus prediction Cjap.Contig17643.g19246.t2[100726 mh6]
Methodcurated