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WormBase Tree Display for CDS: CJA13916

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Name Class

CJA13916SMapS_parentSequenceCjap.Contig17564
StructureSource_exons172
659952
23532492
25582694
27922820
DB_infoDB_remarkCJP-LRON-6 protein; contains similarity to Pfam domain PF13855 (Leucine rich repeat); contains similarity to Interpro domains IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR032675 (Leucine-rich repeat domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00133120
Corresponding_transcriptCJA13916.1
Corresponding_proteinJA47424
Corresponding_oligo_setGPL14145_CJA13916_1137-1196_0.742_136_C
GPL14145_CJA13916_1279-1338_0.799_89_A
GPL14145_CJA13916_1557-1616_0.949_2_B
Matching_cDNAjaponica_GG10165|c1_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA13916_1137-1196_0.742_136_C
GPL14145_CJA13916_1279-1338_0.799_89_A
GPL14145_CJA13916_1557-1616_0.949_2_B
RNASeq_FPKMWBls:00000040.443318From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000270.213727From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000380.270312From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
0From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.06198From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
0.213918From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
0.235896From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
0.239002From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
0.293525From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
0.29983From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0.467433From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
0.607192From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
Remarkbased on Augustus prediction Cjap.Contig17564.g17672.t1[100726 mh6]
Methodcurated