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WormBase Tree Display for CDS: CJA14042

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Name Class

CJA14042EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig16302
StructureSource_exons (11)
DB_infoDatabaseTREEFAMTREEFAM_IDTF313437
DB_remarkcontains similarity to Pfam domain PF14776 (Cation-channel complex subunit UNC-79); contains similarity to Interpro domains IPR024855 (UNC79), IPR016024 (Armadillo-type fold)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00133246
Corresponding_transcriptCJA14042.1
Corresponding_proteinJA45966
Corresponding_oligo_setGPL14145_CJA14042_222-281_0.744_319_C
Matching_cDNAjaponica_GG857|c3_g3_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA14042_222-281_0.744_319_C
RNASeq_FPKMWBls:000000410.2759From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000278.76063From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000384.34731From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
4.94588From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.340411From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
0.380039From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0.435107From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
0.438002From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
0.479369From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
0.538358From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
0.606256From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
1.46256From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig16302.g11013.t1[100726 mh6]
Methodcurated