WormBase Tree Display for Sequence: F17E5

F17E5 DNA: F17E5 30548
  SMap: S_child: Gene_child: WBGene00200930 28303 28158
        WBGene00198419 16176 16478
        WBGene00171381 15776 15796
        WBGene00201967 23184 23359
        WBGene00008924 3051 8329
        WBGene00002991 22834 8310
      CDS_child: F17E5.1a 22818 8781
        F17E5.1a:wp47 22818 8781
        F17E5.1b 14654 8781
        F17E5.1b:wp47 14654 8781
        F17E5.2 3209 7824
        F17E5.2:wp83 3209 7279
        F17E5.2:wp131 3209 7824
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g68_x25_X_m 11223 10610
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g30n11_x25_X_p 3209 7821
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g134_x25_X_m 22644 21690
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g100_x25_X_m 9930 8784
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g105_x25_X_m 10407 10057
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g71_x25_X_m 20089 16640
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g95_x25_X_m 10407 10380
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g31_x25_X_m 20008 11094
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g45_x25_X_m 9826 8784
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g56_x25_X_m 22818 21663
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g30_x25_X_m 11223 9934
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g33_x25_X_p 3209 7821
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g44_x25_X_p 3209 7821
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g39_x25_X_m 22818 11094
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g28_x25_X_m 11223 8784
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g44_x25_X_m 11121 10275
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g81_x25_X_m 10179 10057
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g98_x25_X_p 6544 6650
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g63_x25_X_m 9676 8916
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g46_x25_X_p 6693 6933
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g54_x25_X_p 4730 4843
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g70_x25_X_p 4883 5121
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g25_x25_X_m 14468 11417
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g36_x25_X_p 5608 6507
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g72_x25_X_p 5197 5337
        RNASEQ_embryo_him-8_20dC_post-L1_g72_x25_X_m 20089 19877
        RNASEQ_embryo_him-8_20dC_post-L1_g22n11_x25_X_p 3209 7821
        RNASEQ_embryo_him-8_20dC_post-L1_g39_x25_X_m 11223 9877
        RNASEQ_embryo_him-8_20dC_post-L1_g56_x25_X_m 9676 8784
        RNASEQ_embryo_him-8_20dC_post-L1_g37_x25_X_m 19368 17901
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g122_x25_X_m 21671 21606
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g52_x25_X_m 8960 8820
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g162_x25_X_m 22692 22600
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g48_x25_X_p 6693 7821
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g73_x25_X_m 20089 18098
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g50_x25_X_m 11223 8817
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g41_x25_X_p 3209 6656
        RNASEQ_L4_soma_JK1107_no_DNaseI_g94_x25_X_m 18855 17886
        RNASEQ_L4_soma_JK1107_no_DNaseI_g74_x25_X_m 14087 11609
        RNASEQ_L4_soma_JK1107_no_DNaseI_g37n11_x25_X_p 3209 6432
        RNASEQ_L4_soma_JK1107_no_DNaseI_g109_x25_X_m 20089 19294
        RNASEQ_L4_soma_JK1107_no_DNaseI_g79_x25_X_m 9826 8880
        RNASEQ_L4_soma_JK1107_no_DNaseI_g95_x25_X_m 11223 9982
        RNASEQ_L4_soma_JK1107_no_DNaseI_g110_x25_X_m 11605 11236
        RNASEQ_L4_soma_JK1107_no_DNaseI_g63_x25_X_p 6454 7821
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g61_x25_X_m 22818 22639
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g146_x25_X_m 22635 21777
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g30n11_x25_X_p 3209 7821
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g36_x25_X_m 14627 8784
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g47_x25_X_m 20089 16637
        RNASEQ_early_embryo_g28n11_x25_X_p 3209 7821
        RNASEQ_early_embryo_g40_x25_X_m 22818 16637
        RNASEQ_early_embryo_g31_x25_X_m 15973 8784
        RNASEQ_early_embryo_g41_x25_X_m 10487 10380
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g30_x25_X_m 10487 10380
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g24n11_x25_X_p 3209 7821
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g39n11_x25_X_m 22818 16637
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g34_x25_X_m 15973 11094
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g21_x25_X_m 11223 8784
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g27_x25_X_m 14654 8784
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g37_x25_X_p 4048 7821
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g31_x25_X_m 10487 10380
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g41_x25_X_m 21671 16637
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g52_x25_X_m 15973 15941
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g39n11_x25_X_m 22818 22747
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g36_x25_X_m 11223 8784
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g21n11_x25_X_p 3209 7821
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g37_x25_X_m 10487 10380
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g58_x25_X_m 21671 11094
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g48_x25_X_m 21671 20084
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g37_x25_X_m 11223 8784
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g39_x25_X_m 10487 10380
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g53_x25_X_m 20008 11094
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g22n11_x25_X_p 3209 7821
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g126_x25_X_m 20089 19856
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g103_x25_X_p 6454 6966
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g108_x25_X_m 20304 20162
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g70_x25_X_m 21671 21612
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g56_x25_X_m 11223 10275
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g176_x25_X_m 19368 19285
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g45_x25_X_p 4048 5721
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g83_x25_X_m 9676 8784
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g167_x25_X_p 7820 7945
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g80_x25_X_m 18855 16637
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g77_x25_X_m 10179 10054
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g153_x25_X_m 9930 9809
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g80n11_x25_X_m 11223 10949
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g91_x25_X_m 19873 18116
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g89_x25_X_m 14081 13087
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g73_x25_X_m 18097 14091
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g154_x25_X_m 9676 8784
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g36n11_x25_X_p 3209 7821
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g85_x25_X_m 10407 9916
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g69_x25_X_m 10918 10444
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g153_x25_X_m 9826 9743
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g70_x25_X_m 21614 20099
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g71_x25_X_m 19368 17886
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g75_x25_X_m 14081 11630
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g68n11_x25_X_m 20304 20102
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g39n11_x25_X_p 3209 5418
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g121_x25_X_m 16741 14091
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g87_x25_X_m 10179 10081
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g76_x25_X_m 20089 19985
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g93_x25_X_m 11223 11167
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g48_x25_X_p 5599 6564
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g59_x25_X_p 6693 7821
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g63_x25_X_p 6454 7821
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g73_x25_X_m 18855 17916
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g66_x25_X_m 10322 9928
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g77_x25_X_m 11223 10742
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g93_x25_X_m 9676 8784
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g74_x25_X_m 20089 19288
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g145_x25_X_m 21626 20290
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g44n11_x25_X_p 3209 6426
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g58_x25_X_p 4048 5415
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g67_x25_X_m 20089 18784
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g51_x25_X_p 5599 7821
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g107_x25_X_m 9673 8817
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g96_x25_X_m 22692 21729
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g109_x25_X_m 9930 9770
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g66_x25_X_m 11223 10054
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g52n11_x25_X_p 3058 3222
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g50_x25_X_p 3209 7821
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g68_x25_X_m 21671 18071
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g53_x25_X_m 11223 10483
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g52_x25_X_m 10407 10054
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g66_x25_X_m 9930 8814
        F17E5.gc1 265 81
        F17E5.gc2 3209 7824
        F17E5.gc3 14654 8781
        F17E5.gc4 22818 16849
        ContigX.elegans.jigsaw.2006.mRNA2006 22874 8312
        ContigX.elegans.jigsaw.2005.mRNA2005 3058 8320
        AG1201_F17E5.2.T4 3209 4927
        AG1201_F17E5.2.T1 3209 5473
        AG1201_F17E5.2.T3 3209 6679
        AG1201_F17E5.2.T5 3209 7824
        AG1201_F17E5.2.T8 3209 7824
        AG1201_F17E5.2.T2 6454 7824
        AG1201_F17E5.1.T9 11223 8781
        AG1201_F17E5.1.T5 14654 8781
        AG1201_F17E5.1.T6 14654 8781
        AG1201_F17E5.1.T7 15973 8781
        AG1201_F17E5.1.T4 19368 8781
        AG1201_F17E5.1.T13 21671 8781
        AG1201_F17E5.1.T10 22818 8781
        AG1201_F17E5.1.T2 16750 11402
        AG1201_F17E5.1.T14 22818 18317
        AG1201_F17E5.1.T1 22818 21594
      Transcript: F17E5.3 15776 15796
        F17E5.4 16176 16478
        F17E5.5 28303 28158
        F17E5.6 23184 23359
        F17E5.1a.1 22834 8310
        F17E5.1b.1 14654 8311
        F17E5.2.1 3058 8327
        F17E5.2.2 3051 8329
      Nongenomic: yk213c8 8378 22794
      PCR_product: cenix:147-c4 10473 11658
        cenix:64-b11 4840 5574
        mv_CAA63314 8784 22817
        mv_CAA63315 8783 14653
        mv_F17E5.2 3210 7277
        sjj_F17E5.1 10003 11143
        sjj_F17E5.2 4742 5905
      Allele (473)
      Oligo_set: Aff_F17E5.1A 10235 8781
        Aff_F17E5.2 6436 7279
      Feature_object (182)
      Feature_data: F17E5:Polysome 1 30548
        F17E5:TranscriptionallyActiveRegion 1 30548
        F17E5:ChIPSeqTF 1 30548
        F17E5:TRF 1 30548
        F17E5:Dust 1 30548
        F17E5:inverted 1 30548
      Homol_data (20)
  Structure: From: Source: CHROMOSOME_X
    Overlap_right: T24D3 30449
    Overlap_left: F19H6
    Clone_left_end: F17E5 1
      T24D3 30449
    Clone_right_end: F19H6 11506
  DB_info: Database: EMBL NDB_AC Z50873
        NDB_SV Z50873.2
    DB_remark: [121025] Sequence correction WBsf268060 : Deletion C-1 bases @ 25534
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: McMurray AA
    From_laboratory: HX
    Date_directory: 950327
    Species: Caenorhabditis elegans
    Strain: WBStrain00000001
  Visible: Clone: F17E5
  Properties: Genomic_canonical
    Checksum: MD5: f70de5ef58d0a1c87b50810148445748
    Status: Finished: 27 Mar 1995 00:00:00
      Submitted: 31 Aug 1995 00:00:00
      Annotated: 29 Aug 1995 00:00:00
  Map: Sequence-X Ends: Left: 6691
        Right: 6708
  Interpolated_map_position: X 7.04052
  Assembly_tags: Clone left end 1 4 left hand end of F17E5
      30449 30452 left hand end of T24D3
    Clone right end 11503 11506 right hand end of F19H6
          End of F19H6
    annotation 22932 22980 Bases 22932 to 22980 (48bp) not d.s. but region covered by terminators
      22997 23024 Walks leading into run of G's (looks like 17 G's) have ambiguous data over bases 22997 to 23007 but base counting looks correct
      23052 23096 Bases 23052 to 23096 (44bp) not d.s. but data confirmed with terminators
  Method: Genomic_canonical