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WormBase Tree Display for CDS: F25C8.3b

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Name Class

F25C8.3bEvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceF25C8
StructureSource_exons (34)
DB_infoDatabase (5)
Protein_idCHROMOSOME_VCAE466682
DB_remarkUNC-80 protein; contains similarity to Pfam domains PF15778 (UNC80 N-terminal), PF20262 (Protein UNC80 C-terminal region); contains similarity to Interpro domains IPR031542 (Cation channel complex component UNC80, N-terminal), IPR046460 (Protein UNC80, C-terminal), IPR016024 (Armadillo-type fold)
OriginFrom_laboratoryHX
SpeciesCaenorhabditis elegans
PropertiesCodingCDS
Prediction_statusConfirmed
IsoformAccession_evidenceNDBBJ125319
VisibleGeneWBGene00006812
Corresponding_transcriptF25C8.3b.1
Corresponding_proteinCE47117
Corresponding_PCR_productcenix:46-e9
mv_F25C8.3
sjj_F25C8.3
Corresponding_oligo_set (16)
Matching_cDNA (16)
RNAi_result (12)
Microarray_results (25)
Brief_identificationProtein unc-80Accession_evidenceUniProtSP:Q9XV66
RNASeq_FPKM (74)
Last_reviewed16 Jan 2012 00:00:00WBPerson4025
Remark[120116 gw3] Corrected this isoform, shortening an intron in the middle based on the RNASeq intron splice data.From_analysisRNASeq_Hillier_elegans
Methodcurated