WormBase Tree Display for CDS: F25C8.3b
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F25C8.3b | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F25C8 | |||
Structure | Source_exons (34) | |||||
DB_info | Database (5) | |||||
Protein_id | CHROMOSOME_V | CAE46668 | 2 | |||
DB_remark | UNC-80 protein; contains similarity to Pfam domains PF15778 (UNC80 N-terminal), PF20262 (Protein UNC80 C-terminal region); contains similarity to Interpro domains IPR031542 (Cation channel complex component UNC80, N-terminal), IPR046460 (Protein UNC80, C-terminal), IPR016024 (Armadillo-type fold) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Isoform | Accession_evidence | NDB | BJ125319 | |||
Visible | Gene | WBGene00006812 | ||||
Corresponding_transcript | F25C8.3b.1 | |||||
Corresponding_protein | CE47117 | |||||
Corresponding_PCR_product | cenix:46-e9 | |||||
mv_F25C8.3 | ||||||
sjj_F25C8.3 | ||||||
Corresponding_oligo_set (16) | ||||||
Matching_cDNA (16) | ||||||
RNAi_result (12) | ||||||
Microarray_results (25) | ||||||
Brief_identification | Protein unc-80 | Accession_evidence | UniProt | SP:Q9XV66 | ||
RNASeq_FPKM (74) | ||||||
Last_reviewed | 16 Jan 2012 00:00:00 | WBPerson4025 | ||||
Remark | [120116 gw3] Corrected this isoform, shortening an intron in the middle based on the RNASeq intron splice data. | From_analysis | RNASeq_Hillier_elegans | |||
Method | curated |