WormBase Tree Display for CDS: F59E12.12
expand all nodes | collapse all nodes | view schema
F59E12.12 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F59E12 | |||
Structure | Source_exons | 1 | 71 | |||
119 | 983 | |||||
DB_info | Database | TrEMBL | UniProtAcc | O01904 | ||
UniProt | UniProtAcc | O01904 | ||||
UniProt_GCRP | UniProtAcc | O01904 | ||||
AlphaFold | entry | O01904 | ||||
NCBI_protein | GI_number | GI:351050435 | ||||
Protein_id | CHROMOSOME_II | CCD64978 | 1 | |||
DB_remark | BLI-2 protein; contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat) | |||||
Origin | From_laboratory | RW | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00000252 | ||||
Corresponding_transcript | F59E12.12.1 | |||||
Corresponding_protein | CE11540 | |||||
Corresponding_PCR_product | cenix:244-c8 | |||||
mv_F59E12.12 | ||||||
mv_F59E12.n | ||||||
sjj2_F59E12.12 | ||||||
sjj_F59E12.12 | ||||||
Corresponding_oligo_set (17) | ||||||
Matching_cDNA (65) | ||||||
RNAi_result | WBRNAi00067756 | |||||
WBRNAi00008908 | ||||||
WBRNAi00033210 | ||||||
WBRNAi00066973 | ||||||
WBRNAi00075956 | ||||||
WBRNAi00025777 | ||||||
WBRNAi00049204 | ||||||
Microarray_results (18) | ||||||
Brief_identification | Nematode cuticle collagen N-terminal domain-containing protein | Accession_evidence | UniProt | TR:O01904 | ||
RNASeq_FPKM (74) | ||||||
Method | curated |