WormBase Tree Display for Sequence: H27M09

H27M09 DNA: H27M09 13891
  SMap: S_child: Gene_child: WBGene00019246 8336 9180
        WBGene00305483 4644 4568
        WBGene00001075 1516 3069
        WBGene00019248 4886 3104
        WBGene00019245 9299 12067
        WBGene00194992 5230 5064
        WBGene00019247 5438 7850
        WBGene00201494 5061 5235
      CDS_child: H27M09.1 9308 11991
        H27M09.2 8351 9076
        H27M09.3 5521 7707
        H27M09.4 1550 3019
        H27M09.5 4879 3811
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g55n11_x14_I_p 9308 11988
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g90n11_x14_I_p 5668 5728
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g40n11_x14_I_p 5521 7704
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g176_x14_I_p 5876 6215
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g64n11_x14_I_p 8351 9073
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g51n11_x14_I_p 8351 9073
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g228_x14_I_p 7013 7198
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g118_x14_I_p 10975 11988
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g135n11_x14_I_p 5521 5703
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g81n11_x14_I_p 9308 10767
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g178_x14_I_p 5876 6104
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g209_x14_I_p 6526 6859
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g186_x14_I_p 11559 11650
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g212_x14_I_p 10405 10587
        RNASEQ_embryo_him-8_20dC_post-L1_g181_x14_I_p 6201 6296
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g121n11_x14_I_p 9308 11988
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g97n11_x14_I_p 8351 9073
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g96_x14_I_m 4879 3814
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g218_x14_I_p 2047 2670
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g98n11_x14_I_p 5521 7704
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g160_x14_I_p 1550 2016
        RNASEQ_L4_soma_JK1107_no_DNaseI_g115_x14_I_p 2621 3029
        RNASEQ_L4_soma_JK1107_no_DNaseI_g201n11_x14_I_p 5521 5724
        RNASEQ_early_embryo_g121n11_x14_I_p 5521 7704
        RNASEQ_early_embryo_g1_x14_I_p 1550 3016
        RNASEQ_early_embryo_g30n11_x14t1_I_p 8351 9073
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g191_x14_I_p 6201 6290
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g72n11_x14t1_I_p 9308 11988
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g151_x14_I_p 2527 3016
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g21n11_x14t1_I_p 8351 9073
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g57n11_x14t1_I_p 5521 7704
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g74n11_x14t1_I_p 9308 11988
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g19n11_x14t1_I_p 8351 9073
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g239_x14_I_m 4883 4793
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g63n11_x14_I_p 9308 11988
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g46n11_x14_I_p 5521 7704
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g16n11_x14t1_I_p 8351 9073
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g13n11_x14_I_p 8351 9073
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g33n11_x14_I_p 9308 11988
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g45n11_x14_I_p 5521 7704
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g67_x14_I_p 1550 3016
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g33n11_x14_I_p 8351 9073
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g44n11_x14_I_p 9308 11988
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g61n11_x14_I_p 5668 5728
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g51n11_x14_I_p 5521 7704
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g39_x14_I_p 1550 3016
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g34n11_x14_I_p 5521 7704
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g59n11_x14_I_p 9308 11985
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g126_x14_I_p 1550 3010
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g45n11_x14_I_p 5521 7704
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g68n11_x14_I_p 5668 5728
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g55n11_x14_I_p 9308 11988
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g50_x14_I_p 1550 3016
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g22n11_x14_I_p 8351 9073
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g76n11_x14_I_p 9308 11988
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g15n11_x14t1_I_p 8351 9073
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g28n11_x14t1_I_p 5521 7704
        H27M09.gc1 68 1027
        H27M09.gc2 1419 3019
        H27M09.gc3 4755 3811
        H27M09.gc4 5521 7707
        H27M09.gc5 8351 9076
        H27M09.gc6 9308 11991
        K02F2.gc8 1419 2109
        ContigI.elegans.jigsaw.1205.mRNA1205 8304 9187
        ContigI.elegans.jigsaw.1203.mRNA1203 4943 2128
        ContigI.elegans.jigsaw.1204.mRNA1204 5394 8232
        ContigI.elegans.jigsaw.1206.mRNA1206 9264 12069
        ContigI.elegans.jigsaw.1202.mRNA1202 1404 3064
        AG1201_H27M09.4.T3 1550 3019
        AG1201_RIT1M.1887.T1 1991 1755
        AG1201_H27M09.4.T2 2047 3019
        AG1201_H27M09.4.T4 2161 3019
        AG1201_H27M09.4.T5 2161 3019
        AG1201_H27M09.4.T6 2161 3019
        AG1201_H27M09.4.T1 2188 3019
        AG1201_H27M09.5.T1 4879 3811
        AG1201_RIT1M.781.T1 5222 5070
        AG1201_H27M09.3.T2 5521 7707
        AG1201_H27M09.3.T4 5521 7707
        AG1201_H27M09.3.T1 5668 7707
        AG1201_RIT1M.1305.T1 6804 6439
        AG1201_H27M09.2.T4 8231 9076
        AG1201_H27M09.2.T1 8351 9076
        AG1201_H27M09.1.T3 9308 11991
        AG1201_H27M09.1.T1 9377 11991
        AG1201_H27M09.1.T2 9377 11991
      Transcript: H27M09.6 5230 5064
        H27M09.7 5061 5235
        H27M09.8:wp267 5225 5064
        H27M09.9 4644 4568
        H27M09.1.1 9299 12067
        H27M09.2.1 8336 9180
        H27M09.3.1 5438 7850
        H27M09.4.1 1516 3069
        H27M09.5.1 4886 3104
      Nongenomic: yk236d3 8377 9139
        yk312e7 2160 2995
      PCR_product (19)
      Allele (142)
      Feature_object (189)
      Feature_data: H27M09:Polysome 1 13891
        H27M09:TranscriptionallyActiveRegion 1 13891
        H27M09:ChIPSeqTF 1 13891
        H27M09:TRF 1 13891
        H27M09:Dust 1 13891
        H27M09:inverted 1 13891
      Homol_data (20)
  Structure: From: Source: CHROMOSOME_I
    Overlap_right: T21G5 12667
    Overlap_left: K02F2
    Clone_left_end: T21G5 13067
  DB_info: Database: EMBL NDB_AC FO081567
        NDB_ID _AC006665
        NDB_SV FO081567.1
    Secondary_accession: AC006665
    DB_remark: The 5' clone is K02F2, 2246 bp overlap; the 3' clone is T21G5, 1225 bp overlap. Actual start of this clone is at base position 30820 of K02F2; actual end is at 18397 of T21G5.
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Edwards J
      Harper M
    From_laboratory: RW
    Date: 23 Jun 1998 00:00:00
    Date_directory
    Species: Caenorhabditis elegans
  Visible: Clone: H27M09
  Properties: Genomic_canonical
    Checksum: MD5: 1c29c0346fcbcee5017315c9041c486e
    Status: Finished
      Submitted: 23 Jun 1998 00:00:00
  Map: Sequence-I
  Interpolated_map_position: I 1.39054
  Method: Genomic_canonical