WormBase Tree Display for CDS: PPA14634

PPA14634 SMap: S_parent: Sequence: PPA_ChrV
  Structure: Source_exons: 1 137
      182 301
      362 491
      538 602
      650 806
      971 1090
      1351 1467
      1514 1637
      1679 1759
      1902 1918
      1995 2053
      2320 2573
      2763 2821
      2960 3099
      3143 3235
      3310 3400
      3453 3593
      3642 3787
      3831 3938
      3989 4054
      5520 5553
      5603 5680
      5722 5805
      5852 5920
      5967 6094
      6140 6251
      6349 6468
      6606 6729
      6782 6883
      6935 7029
      7097 7355
      7418 7509
      7556 7613
      7688 7773
      8241 8316
      8361 8458
      8500 8551
      8595 8669
      8720 8856
      8943 9065
      9165 9298
      9415 9514
      9632 9790
      9835 9945
      10024 10148
      10212 10278
  DB_info: Database: pristionchus.org cds gene-UMM-S632-0.4
    DB_remark: PPA-SQV-4 protein; contains similarity to Pfam domains PF00984 (UDP-glucose/GDP-mannose dehydrogenase family, central domain), PF01391 (Collagen triple helix repeat (20 copies)), PF02191 (Olfactomedin-like domain), PF03720 (UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain), PF03721 (UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain); contains similarity to Interpro domains IPR001732 (UDP-glucose/GDP-mannose dehydrogenase, N-terminal), IPR014027 (UDP-glucose/GDP-mannose dehydrogenase, C-terminal), IPR036220 (UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily), IPR036291 (NAD(P)-binding domain superfamily), IPR008160 (Collagen triple helix repeat), IPR008927 (6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily), IPR003112 (Olfactomedin-like domain), IPR014026 (UDP-glucose/GDP-mannose dehydrogenase, dimerisation), IPR028356 (UDP-glucose 6-dehydrogenase, eukaryotic type), IPR017476 (UDP-glucose/GDP-mannose dehydrogenase)
  Origin: From_laboratory: RS
    Species: Pristionchus pacificus
  Properties: Coding: CDS
      CDS_predicted_by: pristionchus.org
      Prediction_status: Partially_confirmed
  Visible: Gene: WBGene00104188
    Corresponding_transcript: PPA14634.1
    Corresponding_protein: PP64002
    Corresponding_oligo_set (21)
    Matching_cDNA: FG102391 Inferred_automatically: transcript_builder.pl
      FG097118 Inferred_automatically: transcript_builder.pl
    Microarray_results (21)
    RNASeq_FPKM: WBls:0000032 17.1051 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 17.7757 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    Remark: [171116 mh6] renamed from gene-UMM-S632-0.4 Curator_confirmed: WBPerson4055
  Method: curated