WormBase Tree Display for CDS: PPA19972a
expand all nodes | collapse all nodes | view schema
PPA19972a | Evidence | Curator_confirmed | WBPerson4055 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | PPA_ChrIII | |||
Structure | Source_exons (58) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S66-4.10 | ||
DB_remark | PPA-UNC-79 protein; contains similarity to Pfam domain PF14776 (Cation-channel complex subunit UNC-79); contains similarity to Interpro domains IPR024855 (UNC79), IPR016024 (Armadillo-type fold) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Isoform | Curator_confirmed | WBPerson4055 | ||||
Visible | Gene | WBGene00109526 | ||||
Corresponding_transcript | PPA19972a.1 | |||||
Corresponding_protein | PP75410 | |||||
Corresponding_oligo_set | GPL14372_Probes_17252 | |||||
GPL14372_Probes_67072 | ||||||
GPL14372_Probes_67073 | ||||||
Microarray_results | GPL14372_Probes_17252 | |||||
GPL14372_Probes_67072 | ||||||
GPL14372_Probes_67073 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Last_reviewed | 11 Sep 2019 16:39:12 | WBPerson4055 | ||||
Remark | [171116 mh6] renamed from gene-UMM-S66-4.10 | Curator_confirmed | WBPerson4055 | |||
[190911 mh6] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4055 | ||||
From_analysis | RNASeq | |||||
Method | curated |