WormBase Tree Display for CDS: PPA27795
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PPA27795 | SMap | S_parent | Sequence | PPA_ChrV | ||
---|---|---|---|---|---|---|
Structure | Source_exons (22) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S13-21.60 | ||
TREEFAM | TREEFAM_ID | TF313242 | ||||
DB_remark | PPA-UNC-18 protein; contains similarity to Pfam domain PF00995 (Sec1 family); contains similarity to Interpro domains IPR001619 (Sec1-like protein), IPR043127 (Sec1-like, domain 3a), IPR043154 (Sec1-like, domain 1), IPR036045 (Sec1-like superfamily), IPR027482 (Sec1-like, domain 2) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00117349 | ||||
Corresponding_transcript | PPA27795.1 | |||||
Corresponding_protein | PP69402 | |||||
Corresponding_oligo_set | GPL14372_Probes_56961 | |||||
Microarray_results | GPL14372_Probes_56961 | |||||
RNASeq_FPKM | WBls:0000032 | 2.07244 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 2.44759 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S13-21.60 | Curator_confirmed | WBPerson4055 | |||
Method | curated |