WormBase Tree Display for Gene: WBGene00000135
expand all nodes | collapse all nodes | view schema
| WBGene00000135 | SMap | S_parent | Sequence | M195 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | amt-3 | |||||||
| Sequence_name | M195.3 | ||||||||
| Molecular_name | M195.3 | ||||||||
| M195.3.1 | |||||||||
| CE32912 | |||||||||
| Other_name | CELE_M195.3 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | amt-3 | ||||||||
| DB_info | Database | AceView | gene | 2I654 | |||||
| WormQTL | gene | WBGene00000135 | |||||||
| WormFlux | gene | WBGene00000135 | |||||||
| NDB | locus_tag | CELE_M195.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000135|UniProtKB=Q21565 | |||||||
| family | PTHR11730 | ||||||||
| NCBI | gene | 174338 | |||||||
| RefSeq | protein | NM_063360.7 | |||||||
| SwissProt | UniProtAcc | Q21565 | |||||||
| TREEFAM | TREEFAM_ID | TF313588 | |||||||
| UniProt_GCRP | UniProtAcc | Q21565 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | amt | ||||||||
| Allele (86) | |||||||||
| Strain | WBStrain00002033 | ||||||||
| WBStrain00002112 | |||||||||
| WBStrain00031824 | |||||||||
| WBStrain00031833 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00072109 | ||||||||
| 00072110 | |||||||||
| 00072111 | |||||||||
| 00072112 | |||||||||
| 00072113 | |||||||||
| 00072114 | |||||||||
| 00072115 | |||||||||
| 00106847 | |||||||||
| 00106848 | |||||||||
| 00106849 | |||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00000133 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000134 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004358 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00004359 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00000136 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | amt-3 encodes one of four C. elegans homologs of AMT1 (AT11_ARATH), a high-affinity ammonium transporter from Arabidopsis thaliana; AMT-3 is closely similar to its paralog AMT-2, with somewhat more distant paralogy to AMT-1 and AMT-4. | Paper_evidence | WBPaper00013009 | |||||
| WBPaper00013553 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable ammonium transmembrane transporter activity. Predicted to be involved in ammonium homeostasis and ammonium transmembrane transport. Predicted to be located in membrane. Expressed in head and tail. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | M195.3 | |||||||
| Corresponding_CDS_history | M195.3:wp92 | ||||||||
| Corresponding_transcript | M195.3.1 | ||||||||
| Other_sequence (20) | |||||||||
| Associated_feature | WBsf988716 | ||||||||
| WBsf988717 | |||||||||
| WBsf1012687 | |||||||||
| WBsf1012688 | |||||||||
| WBsf223488 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00051013 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00034473 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram846 | ||||||||
| Expr6434 | |||||||||
| Expr6435 | |||||||||
| Expr1025448 | |||||||||
| Expr1154721 | |||||||||
| Expr2009327 | |||||||||
| Expr2027563 | |||||||||
| Drives_construct | WBCnstr00002817 | ||||||||
| WBCnstr00004432 | |||||||||
| WBCnstr00037712 | |||||||||
| Construct_product | WBCnstr00037712 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (125) | |||||||||
| Interaction (55) | |||||||||
| Map_info | Map | II | Position | 0.767439 | Error | 0.000545 | |||
| Positive | Positive_clone | M195 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4902 | |||||||
| 4274 | |||||||||
| 4696 | |||||||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
