WormBase Tree Display for Gene: WBGene00000478
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| WBGene00000478 | SMap | S_parent | Sequence | F27E11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | cfz-2 | Person_evidence | WBPerson194 | |||||
| Sequence_name | F27E11.3 | ||||||||
| Molecular_name | F27E11.3 | ||||||||
| F27E11.3.1 | |||||||||
| CE39149 | |||||||||
| Other_name | CELE_F27E11.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | cfz-2 | ||||||||
| DB_info | Database | AceView | gene | 5D920 | |||||
| WormQTL | gene | WBGene00000478 | |||||||
| SignaLink | protein | WBGene00000478 | |||||||
| WormFlux | gene | WBGene00000478 | |||||||
| NDB | locus_tag | CELE_F27E11.3 | |||||||
| Panther | gene | CAEEL|EnsemblGenome=WBGene00000478|UniProtKB=G5ECQ2 | |||||||
| family | PTHR11309 | ||||||||
| NCBI | gene | 178768 | |||||||
| RefSeq | protein | NM_071564.8 | |||||||
| SwissProt | UniProtAcc | G5ECQ2 | |||||||
| UniProt_GCRP | UniProtAcc | G5ECQ2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cfz | ||||||||
| Allele (196) | |||||||||
| Strain | WBStrain00031864 | ||||||||
| WBStrain00008500 | |||||||||
| WBStrain00008502 | |||||||||
| WBStrain00008506 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (29) | |||||||||
| Ortholog (61) | |||||||||
| Paralog | WBGene00003006 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00003238 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003397 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00022242 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | cfz-2 encodes one of four C. elegans Frizzled homologs, integral membrane proteins that contain an external cysteine-rich domain (CRD) and seven transmembrane domains and that function in a wide variety of species as receptors for Wnt glycoprotein signaling molecules; CFZ-2 activity is required for cell migration and for vulval development. | Paper_evidence | WBPaper00026706 | |||||
| WBPaper00028436 | |||||||||
| WBPaper00032017 | |||||||||
| WBPaper00035405 | |||||||||
| WBPaper00037046 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 28 Oct 2010 00:00:00 | ||||||||
| Automated_description | Predicted to enable Wnt receptor activity and Wnt-protein binding activity. Involved in neuroblast migration; neuron migration; and positive regulation of motor neuron migration. Predicted to be located in plasma membrane. Expressed in intestine; nervous system; and pharynx. Is an ortholog of human FZD5 (frizzled class receptor 5). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F27E11.3 | |||||||
| Corresponding_CDS_history | F27E11.3a:wp149 | ||||||||
| F27E11.3a:wp246 | |||||||||
| F27E11.3b:wp149 | |||||||||
| F27E11.3b:wp246 | |||||||||
| Corresponding_transcript | F27E11.3.1 | ||||||||
| Other_sequence (12) | |||||||||
| Associated_feature (22) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00061144 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00045754 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091577 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045753 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028248 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014004 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00101351 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00098912 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3645 | ||||||||
| Expr4446 | |||||||||
| Expr11482 | |||||||||
| Expr13819 | |||||||||
| Expr1026605 | |||||||||
| Expr1030280 | |||||||||
| Expr1149663 | |||||||||
| Expr2009941 | |||||||||
| Expr2028181 | |||||||||
| Drives_construct | WBCnstr00011569 | ||||||||
| WBCnstr00012010 | |||||||||
| WBCnstr00040137 | |||||||||
| Construct_product | WBCnstr00008352 | ||||||||
| WBCnstr00019046 | |||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (208) | |||||||||
| Interaction (46) | |||||||||
| Anatomy_function | WBbtf0068 | ||||||||
| WBbtf0811 | |||||||||
| WBProcess | WBbiopr:00000023 | ||||||||
| WBbiopr:00000073 | |||||||||
| Map_info | Map | V | Position | -11.6718 | Error | 0.034406 | |||
| Positive | Positive_clone | F27E11 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4881 | |||||||
| 4924 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (38) | |||||||||
| Remark | Sequence connection from [Endres JB, Cordes S, Hawkins N, Garriga G], [020802 krb] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
