WormBase Tree Display for Gene: WBGene00022242
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| WBGene00022242 | SMap | S_parent | Sequence | Y73B6BL | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sfrp-1 | Paper_evidence | WBPaper00038522 | |||||
| Person_evidence | WBPerson342 | ||||||||
| Sequence_name | Y73B6BL.21 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_Y73B6BL.21 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | sfrp-1 | ||||||||
| DB_info | Database | AceView | gene | 4H162 | |||||
| WormQTL | gene | WBGene00022242 | |||||||
| WormFlux | gene | WBGene00022242 | |||||||
| NDB | locus_tag | CELE_Y73B6BL.21 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00022242|UniProtKB=Q9GUF5 | |||||||
| family | PTHR11309 | ||||||||
| NCBI | gene | 177401 | |||||||
| RefSeq | protein | NM_068576.7 | |||||||
| NM_001380275.1 | |||||||||
| NM_001306847.2 | |||||||||
| NM_001313061.3 | |||||||||
| TrEMBL | UniProtAcc | V6CLQ6 | |||||||
| A0A0K3ARM8 | |||||||||
| V6CLM0 | |||||||||
| Q9GUF5 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9GUF5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 17 Jun 2011 16:06:01 | WBPerson2970 | Name_change | CGC_name | sfrp-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sfrp | ||||||||
| Allele (66) | |||||||||
| Strain | WBStrain00036420 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00000836 | ||||||||
| 00000837 | |||||||||
| 00000838 | |||||||||
| 00000839 | |||||||||
| 00000840 | |||||||||
| 00000841 | |||||||||
| 00092506 | |||||||||
| Ortholog (41) | |||||||||
| Paralog | WBGene00000478 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00003006 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003238 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003397 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable Wnt-protein binding activity. Predicted to be involved in canonical Wnt signaling pathway and non-canonical Wnt signaling pathway. Located in nucleus. Expressed in head muscle and ventral cord neurons. Human ortholog(s) of this gene implicated in in situ carcinoma; leiomyoma; and renal cell carcinoma. Is an ortholog of human SFRP1 (secreted frizzled related protein 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:8719 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10776) | ||||
| DOID:4450 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10776) | ||||||
| DOID:127 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10776) | ||||||
| Molecular_info | Corresponding_CDS | Y73B6BL.21a | |||||||
| Y73B6BL.21b | |||||||||
| Y73B6BL.21c | |||||||||
| Y73B6BL.21d | |||||||||
| Corresponding_CDS_history | Y73B6BL.21:wp155 | ||||||||
| Corresponding_transcript | Y73B6BL.21a.1 | ||||||||
| Y73B6BL.21b.1 | |||||||||
| Y73B6BL.21c.1 | |||||||||
| Y73B6BL.21d.1 | |||||||||
| Other_sequence (15) | |||||||||
| Associated_feature | WBsf651845 | ||||||||
| WBsf651846 | |||||||||
| WBsf996741 | |||||||||
| WBsf1017520 | |||||||||
| WBsf230154 | |||||||||
| WBsf230155 | |||||||||
| WBsf230156 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00058320 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr9347 | ||||||||
| Expr9509 | |||||||||
| Expr1017256 | |||||||||
| Expr1039807 | |||||||||
| Expr1161729 | |||||||||
| Expr2015787 | |||||||||
| Expr2034020 | |||||||||
| Drives_construct | WBCnstr00024323 | ||||||||
| Construct_product | WBCnstr00008812 | ||||||||
| WBCnstr00014074 | |||||||||
| WBCnstr00024323 | |||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (119) | |||||||||
| Interaction (13) | |||||||||
| Map_info | Map | IV | Position | 3.19514 | Error | 0.000339 | |||
| Positive | Positive_clone | Y73B6BL | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038444 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00038522 | |||||||||
| WBPaper00041988 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058559 | |||||||||
| WBPaper00059401 | |||||||||
| WBPaper00060132 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
