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WormBase Tree Display for Gene: WBGene00000608

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Name Class

WBGene00000608SMapS_parentSequenceZK1193
IdentityVersion1
NameCGC_namecol-19Person_evidenceWBPerson345
Sequence_nameZK1193.1
Molecular_nameZK1193.1
ZK1193.1.1
CE05126
Other_namecol19Accession_evidenceEMBLM25481
CELE_ZK1193.1Accession_evidenceNDBBX284606
Public_namecol-19
DB_infoDatabaseWormQTLgeneWBGene00000608
WormFluxgeneWBGene00000608
NDBlocus_tagCELE_ZK1193.1
PanthergeneCAEEL|WormBase=WBGene00000608|UniProtKB=P18835
familyPTHR24637
NCBIgene180397
RefSeqproteinNM_001038488.6
SwissProtUniProtAccP18835
TREEFAMTREEFAM_IDTF319043
UniProt_GCRPUniProtAccP18835
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:21WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcol
Allele (25)
Legacy_information[C.elegansII] NMK. Transcript present in dauer, adult;not detected in egg or L4. Encodes collagen,col-8 family. [Cox and Hirsh 1985; Liu et al. 1995; VT]
StrainWBStrain00007918
WBStrain00007932
WBStrain00007933
WBStrain00033323
WBStrain00034928
RNASeq_FPKM (74)
GO_annotation (18)
OrthologWBGene00060290Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00030018Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00090321Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00154599Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00122229Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00092011Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00090372Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00100342Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00092285Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00098057Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00092286Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00095326Pristionchus pacificusFrom_analysisOMA
WBGene00228353Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g2710Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g3209Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g11550Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g12630Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g8237Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g5813Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g13436Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g20725Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP32.g16563Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g14608Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g27730Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g19544Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00370.g9892Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00370.g9907Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_06752.g20465Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_11032.g23007Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-col-19Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15248Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02571.g27061Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_03280Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_017815Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_022148Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g00514Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g5584Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0022400Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g18272Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00058866Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00237999Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00288383Trichuris murisFrom_analysisWormBase-Compara
ZFIN:ZDB-GENE-030131-3430Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
ZFIN:ZDB-GENE-110411-119Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
MGI:88445Mus musculusFrom_analysisEnsEMBL-Compara
SonicParanoid
MGI:88447Mus musculusFrom_analysisEnsEMBL-Compara
SonicParanoid
MGI:88466Mus musculusFrom_analysisEnsEMBL-Compara
SonicParanoid
MGI:1916950Mus musculusFrom_analysisEnsEMBL-Compara
SonicParanoid
MGI:1924268Mus musculusFrom_analysisEnsEMBL-Compara
SonicParanoid
MGI:1095396Mus musculusFrom_analysisEnsEMBL-Compara
SonicParanoid
Paralog (165)
Structured_descriptionConcise_descriptioncol-19 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies) that is required for normal structure of the alae; expressed during the L2-to-dauer and L4-to-adult molts with strongest expression in adult animals.Paper_evidenceWBPaper00000748
WBPaper00002222
WBPaper00005747
Curator_confirmedWBPerson48
Date_last_updated01 Sep 2004 00:00:00
Automated_descriptionA structural constituent of collagen and cuticulin-based cuticle. Involved in cuticle development involved in collagen and cuticulin-based cuticle molting cycle. Located in alae of collagen and cuticulin-based cuticle extracellular matrix and annuli extracellular matrix. Expressed in cuticle; hyp7 syncytium; syncytium; vulva; and in male.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSZK1193.1
Corresponding_CDS_historyZK1193.1a:wp145
ZK1193.1b:wp145
Corresponding_transcriptZK1193.1.1
Other_sequence (62)
Associated_featureWBsf235261
WBsf235262
Experimental_infoRNAi_result (14)
Expr_pattern (13)
Drives_construct (40)
Construct_productWBCnstr00000750
WBCnstr00004851
WBCnstr00010258
WBCnstr00011689
WBCnstr00012421
WBCnstr00037431
Microarray_results (21)
Expression_cluster (272)
Interaction (298)
Map_infoMapXPosition-19.9103
PositivePositive_cloneZK1193Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (68)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene