WormBase Tree Display for Gene: WBGene00000647
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| WBGene00000647 | Evidence | Person_evidence | WBPerson345 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson651 | |||||||||
| SMap | S_parent | Sequence | Y49F6B | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-71 | Person_evidence | WBPerson345 | |||||
| Sequence_name | Y49F6B.10 | ||||||||
| Molecular_name | Y49F6B.10 | ||||||||
| Y49F6B.10.1 | |||||||||
| CE25334 | |||||||||
| Other_name | Y49F6B.p | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y49F6B.10 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | col-71 | ||||||||
| DB_info | Database | AceView | gene | 2D790 | |||||
| WormQTL | gene | WBGene00000647 | |||||||
| WormFlux | gene | WBGene00000647 | |||||||
| NDB | locus_tag | CELE_Y49F6B.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000647|UniProtKB=Q9N4U2 | |||||||
| family | PTHR24023 | ||||||||
| NCBI | gene | 173695 | |||||||
| RefSeq | protein | NM_062161.5 | |||||||
| SwissProt | UniProtAcc | Q9N4U2 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N4U2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (107) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00094909 | ||||||||
| 00094910 | |||||||||
| 00094911 | |||||||||
| 00094912 | |||||||||
| 00094913 | |||||||||
| 00094914 | |||||||||
| 00107645 | |||||||||
| Ortholog (29) | |||||||||
| Paralog (163) | |||||||||
| Structured_description | Automated_description | Predicted to be a structural constituent of cuticle. Involved in collagen and cuticulin-based cuticle development. Predicted to be located in membrane and nucleus. Expressed in hyp7 syncytium and seam cell. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y49F6B.10 | |||||||
| Corresponding_transcript | Y49F6B.10.1 | ||||||||
| Other_sequence | DV019696.1 | ||||||||
| EG025793.1 | |||||||||
| CJC05350_1 | |||||||||
| CSC01977_1 | |||||||||
| CBC00435_1 | |||||||||
| X89450.1 | |||||||||
| FD516848.1 | |||||||||
| Associated_feature | WBsf649971 | ||||||||
| WBsf981180 | |||||||||
| WBsf987267 | |||||||||
| WBsf222865 | |||||||||
| WBsf222866 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00076804 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00007502 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057035 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095082 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037305 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020800 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11721 | ||||||||
| Expr11731 | |||||||||
| Expr1017086 | |||||||||
| Expr1030380 | |||||||||
| Expr1160476 | |||||||||
| Expr2010418 | |||||||||
| Expr2028659 | |||||||||
| Drives_construct | WBCnstr00019342 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (257) | |||||||||
| Interaction (26) | |||||||||
| Map_info | Map | II | Position | -6.25066 | Error | 0.000647 | |||
| Positive | Positive_clone | Y49F6B | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00043837 | |||||||||
| WBPaper00044857 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059205 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
