WormBase Tree Display for Gene: WBGene00000730

WBGene00000730 Evidence: Person_evidence: WBPerson345
      WBPerson651
  SMap: S_parent: Sequence: T11F9
  Identity: Version: 1
    Name: CGC_name: col-157 Person_evidence: WBPerson345
      Sequence_name: T11F9.9
      Molecular_name: T11F9.9
        T11F9.9.1
        CE06421
      Other_name: CELE_T11F9.9 Accession_evidence: NDB BX284605
      Public_name: col-157
    DB_info: Database: AceView gene 5L963
        WormQTL gene WBGene00000730
        WormFlux gene WBGene00000730
        NDB locus_tag CELE_T11F9.9
        Panther gene CAEEL|WormBase=WBGene00000730|UniProtKB=Q22393
          family PTHR24637
        NCBI gene 188426
        RefSeq protein NM_073512.3
        TrEMBL UniProtAcc Q22393
        UniProt_GCRP UniProtAcc Q22393
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele (27)
    Strain: WBStrain00049369
    RNASeq_FPKM (74)
    GO_annotation: 00075144
      00075145
      00075146
      00107718
    Ortholog (56)
    Paralog (163)
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T11F9.9
    Corresponding_transcript: T11F9.9.1
    Other_sequence: GP00731
      CB036918.1
      AI253459.1
      EV851213.1
      SS01548
      SRC00528_3
      SSC03920_1
      AS01799
      SRC02495_1
      GPC00995_1
      OVC09094_1
      EC278300.1
      FC817183.1
      FC816995.1
      TCC00645_2
      EV854178.1
      HCC00449_1
      AA618942.1
      GPC00279_1
      ASC34971_1
      AS10223
      SSC04273_1
      HC02350
      AA618931.1
      FK802540.1
      XI04182
      OVC09122
      SS01150
      EV854136.1
      HG05482
      GPC00121_1
      TX00554
      EX912692.1
      SSC03099_1
      FC811460.1
      SS00070
      HCC00361_1
      EX547635.1
      SSC02818_2
      TDC02504_1
      CJC00227_1
      AM744141.1
      BXC04270_1
      AI322105.1
      FC811410.1
      BXC03832_1
      AI111198.1
      XIC01863_1
      FC810215.1
      EV853816.1
      ASC04184_1
      FE918326.1
      HBC21299_1
      FC815596.1
      EX012614.1
      FG977085.1
      AI444913.1
      GPC00179_1
      FG647800.1
      HC02407
      HC02770
      R95268.1
      Dviv_isotig17945
      BMC14835_1
      SS01340
      ACC15522_1
      Dviv_isotig24312
      SR00995
      AW453451.1
      Dviv_isotig08629
      SR00012
      BUC01906_1
      TX00602
      DVC00195_1
      BU587021.1
      AI438380.1
      GPC00841_1
      FC817754.1
      GPC00121_2
      EV853014.1
      CB038496.1
      PT00180
      EV851934.1
      EV852529.1
      AA618924.1
      DN191154.1
      OVC00144_1
      EV854010.1
      GPC00408_1
      GP01275
      GP00465
      EV851685.1
      CK725874.1
      FC816693.1
      GPC01826_1
      Dviv_isotig10717
      Dviv_isotig08628
      ES739118.1
      SSC06463_1
      S70028.1
      EV853371.1
      EV853647.1
      MIC09200_1
      BUC00114_1
      AI111214.1
      Tcol_isotig15719
      HCC00013_1
      WBC03199_1
      SRC00528_4
      GP00466
      GPC02983_1
      Dviv_isotig08627
      OOC00154_1
      SS01367
      SRC09331_1
      SSC03053_1
      BF918222.1
      GP03016
      HBC02775_1
      AM743791.1
      GPC00431_1
      FC816298.1
      HC05389
      FG974680.1
      SS00069
      FG979590.1
      AW355793.1
      CK855471.1
      CK850808.1
      AW288245.1
      Dviv_isotig23497
      GPC00936_1
      CK725994.1
      ASC02146_1
      EV852564.1
      SSC02670_2
      SR00989
      Dviv_isotig17944
      FF678888.1
      BF942765.1
      GPC00619_1
      EV852637.1
      FG980946.1
      GPC00332_1
      CK726287.1
      WBC03284_1
      GP00446
      HBC00763_1
      GP00469
      AM744653.1
      BMC11443_1
      FC817483.1
      FC818401.1
      HC03842
      GP02256
      SR00846
      BF824668.1
      XIC02715_1
      HBC19270_1
      BF918263.1
      Dviv_isotig25596
      Dviv_isotig10716
      EV854355.1
      AS00122
      EV852682.1
      WBC01474_1
      MH05781
      XI03244
      EV853197.1
      SRC08149_1
      BXC00523_1
      Oden_isotig16126
      AM744552.1
      ALC01023_1
      ES742766.1
      HC00364
      FK808792.1
      HC02775
      SS01675
      DVC00602_1
      GPC00231_1
      EV852282.1
      Dviv_isotig08630
      EV853475.1
      AW980219.1
    Associated_feature: WBsf647265
      WBsf1001364
      WBsf1020457
      WBsf232509
  Experimental_info: RNAi_result (12)
    Expr_pattern: Expr1012530
      Expr1030444
      Expr1156737
      Expr2010352
      Expr2028595
    Drives_construct: WBCnstr00037328
    Construct_product: WBCnstr00037328
    Microarray_results (14)
    Expression_cluster (213)
    Interaction (117)
  Map_info: Map: V Position: 3.1627 Error: 0.001368
    Positive: Positive_clone: T11F9 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene