WormBase Tree Display for Gene: WBGene00001064
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WBGene00001064 | SMap | S_parent | Sequence | T14B4 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | dpy-2 | Person_evidence | WBPerson261 | |||||
Sequence_name | T14B4.6 | ||||||||
Molecular_name | T14B4.6 | ||||||||
T14B4.6.1 | |||||||||
CE04953 | |||||||||
Other_name | rol-2 | ||||||||
CELE_T14B4.6 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | dpy-2 | ||||||||
DB_info | Database | AceView | gene | 2H5 | |||||
WormQTL | gene | WBGene00001064 | |||||||
WormFlux | gene | WBGene00001064 | |||||||
NDB | locus_tag | CELE_T14B4.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001064|UniProtKB=P35799 | |||||||
family | PTHR24637 | ||||||||
NCBI | gene | 174107 | |||||||
RefSeq | protein | NM_062966.9 | |||||||
SwissProt | UniProtAcc | P35799 | |||||||
UniProt_GCRP | UniProtAcc | P35799 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:22 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | dpy | ||||||||
Reference_allele | WBVar00142906 | ||||||||
Allele (30) | |||||||||
Legacy_information | e8 : dumpy left roller; early larvae non-dumpy. ES3 ME1. NA > 10 (e115 sc38ts sc78sd e489 (pka rol-2) etc.). | ||||||||
See dpy-2. | |||||||||
See also e115, e487, e489, e961, e1280, e1359 | |||||||||
[C.elegansII] e8 : dumpy left roller; early larvae non-dumpy. Suppresses some alleles of glp-1, emb-5. ES3 ME1. OA>10: e115, sc38ts, sc78sd,e489 (pka rol-2), e961, q292 etc. Cloned: encodes collagen, 41% identical to adjacent gene dpy-10. [Brenner 1974; Levy et al. 1993; CH] | |||||||||
Strain (15) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00044941 | ||||||||
00044942 | |||||||||
00044943 | |||||||||
00044944 | |||||||||
00044945 | |||||||||
00044946 | |||||||||
00044947 | |||||||||
00044948 | |||||||||
00108188 | |||||||||
Ortholog | WBGene00054147 | Caenorhabditis remanei | From_analysis | OMA | |||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00032387 | Caenorhabditis briggsae | From_analysis | Hillier-set | ||||||
OrthoMCL | |||||||||
OMA | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00155980 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00105809 | Pristionchus pacificus | From_analysis | OMA | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00129932 | Caenorhabditis japonica | From_analysis | OMA | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00230084 | Brugia malayi | From_analysis | WormBase-Compara | ||||||
CBOVI.g12657 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
CSP21.g3260 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
CSP26.g21587 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g12622 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g23446 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP31.g14856 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
CSP32.g18011 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP38.g4293 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP39.g36 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g8486 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cang_2012_03_13_00375.g9958 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
Cang_2012_03_13_11123.g23052 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
Cni-dpy-2 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold629.g12057 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_00043.g2301 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
Pan_g10246 | Panagrellus redivivus | From_analysis | WormBase-Compara | ||||||
Sp34_20272510 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrII_pilon.g4837 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00246753 | Onchocerca volvulus | From_analysis | WormBase-Compara | ||||||
WBGene00265617 | Strongyloides ratti | From_analysis | WormBase-Compara | ||||||
WBGene00289803 | Trichuris muris | From_analysis | WormBase-Compara | ||||||
ZFIN:ZDB-GENE-000208-23 | Danio rerio | From_analysis | EnsEMBL-Compara | ||||||
PhylomeDB | |||||||||
ZFIN:ZDB-GENE-041105-6 | Danio rerio | From_analysis | EnsEMBL-Compara | ||||||
PhylomeDB | |||||||||
Paralog (162) | |||||||||
Structured_description | Concise_description | The dpy-2 gene encodes an unusual cuticular collagen that is required for maintaining the normal body length of the animal in later larval stages; dpy-2 interacts with other cuticular collagens such as dpy-10 and sqt-1, and suppresses mutations in glp-1, mup-1, and emb-5. | Paper_evidence | WBPaper00001792 | |||||
WBPaper00003853 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to be a structural constituent of collagen and cuticulin-based cuticle. Involved in cuticle development involved in collagen and cuticulin-based cuticle molting cycle; post-embryonic body morphogenesis; and regulation of growth. Predicted to be part of collagen trimer. Expressed in head neurons and pharynx. Used to study skin disease. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Experimental_model | DOID:37 | Homo sapiens | Paper_evidence | WBPaper00061220 | ||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 02 May 2022 00:00:00 | ||||||||
Models_disease_in_annotation | WBDOannot00001173 | ||||||||
Molecular_info | Corresponding_CDS | T14B4.6 | |||||||
Corresponding_transcript | T14B4.6.1 | ||||||||
Other_sequence (15) | |||||||||
Associated_feature | WBsf644316 | ||||||||
WBsf657711 | |||||||||
WBsf221491 | |||||||||
WBsf221492 | |||||||||
Experimental_info | RNAi_result (23) | ||||||||
Expr_pattern | Expr4481 | ||||||||
Expr4482 | |||||||||
Expr1024298 | |||||||||
Expr1030673 | |||||||||
Expr1156898 | |||||||||
Expr2011070 | |||||||||
Expr2029307 | |||||||||
Drives_construct | WBCnstr00012049 | ||||||||
WBCnstr00012050 | |||||||||
WBCnstr00037107 | |||||||||
Construct_product | WBCnstr00037107 | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (271) | |||||||||
Interaction (192) | |||||||||
WBProcess | WBbiopr:00000124 | ||||||||
Map_info | Map | II | Position | 0.042787 | Error | 0.009724 | |||
Well_ordered | |||||||||
Positive | Inside_rearr | arDp2 | |||||||
Positive_clone | T14B4 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
Mapping_data | 2_point | 36 | |||||||
47 | |||||||||
217 | |||||||||
6101 | |||||||||
7051 | |||||||||
Multi_point (17) | |||||||||
Pos_neg_data (22) | |||||||||
Reference (73) | |||||||||
Method | Gene |