WormBase Tree Display for Gene: WBGene00001070
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WBGene00001070 | SMap | S_parent | Sequence | C31H2 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | dpy-8 | Person_evidence | WBPerson261 | |||||
Sequence_name | C31H2.2 | ||||||||
Molecular_name | C31H2.2 | ||||||||
C31H2.2.1 | |||||||||
CE04130 | |||||||||
Other_name | CELE_C31H2.2 | Accession_evidence | NDB | BX284606 | |||||
Public_name | dpy-8 | ||||||||
DB_info | Database | AceView | gene | XF768 | |||||
WormQTL | gene | WBGene00001070 | |||||||
WormFlux | gene | WBGene00001070 | |||||||
NDB | locus_tag | CELE_C31H2.2 | |||||||
NCBI | gene | 180785 | |||||||
RefSeq | protein | NM_076472.4 | |||||||
TrEMBL | UniProtAcc | Q18345 | |||||||
UniProt_GCRP | UniProtAcc | Q18345 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:22 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | dpy | ||||||||
Reference_allele | WBVar00142984 | ||||||||
Allele (31) | |||||||||
Legacy_information | e130 : medium dumpy (non-roller) ES3 ME1. NA > 10 (e1281ts sc24ts (left roller dumpy) etc.). | ||||||||
See also e2279 | |||||||||
[C.elegansII] e130 : medium dumpy (non-roller) Suppresses some alleles of glp-1, emb-5.ES3. ME1. OA>10: e1281ts, sc24ts (left roller dumpy), sc44, e2279, q287 (weak?), etc. [Brenner 1971; Maine and Kimble 1989] | |||||||||
Strain (24) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00060998 | ||||||||
00060999 | |||||||||
00061000 | |||||||||
00061001 | |||||||||
00108193 | |||||||||
Ortholog (21) | |||||||||
Paralog (162) | |||||||||
Structured_description | Concise_description | dpy-8 encodes a collagen with a nematode-specific N-terminal domain that is required for normal body morphology and (perhaps) for a normal embryonic cell division rate; dpy-8 interacts genetically with emb-5 and glp-1. | Paper_evidence | WBPaper00001153 | |||||
WBPaper00003197 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to be a structural constituent of cuticle. Involved in cuticle development involved in collagen and cuticulin-based cuticle molting cycle. Predicted to be located in membrane. Predicted to be part of collagen trimer. Used to study skin disease. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Experimental_model | DOID:37 | Homo sapiens | Paper_evidence | WBPaper00061220 | ||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 02 May 2022 00:00:00 | ||||||||
Models_disease_asserted | WBDOannot00001176 | ||||||||
Molecular_info (4) | |||||||||
Experimental_info | RNAi_result (12) | ||||||||
Expr_pattern | Expr1024695 | ||||||||
Expr1030678 | |||||||||
Expr1145654 | |||||||||
Expr2011078 | |||||||||
Expr2029315 | |||||||||
Drives_construct | WBCnstr00006811 | ||||||||
WBCnstr00006814 | |||||||||
WBCnstr00037101 | |||||||||
Construct_product | WBCnstr00037101 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (267) | |||||||||
Interaction (145) | |||||||||
WBProcess | WBbiopr:00000124 | ||||||||
Map_info | Map | X | Position | -6.16296 | Error | 0.008733 | |||
Well_ordered | |||||||||
Positive | Inside_rearr | mnDp30 | |||||||
Positive_clone | C31H2 | Person_evidence | WBPerson297 | ||||||
Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
Negative | Outside_rearr | mcDf2 | |||||||
Mapping_data | 2_point | 153 | |||||||
162 | |||||||||
163 | |||||||||
295 | |||||||||
3937 | |||||||||
4465 | |||||||||
7086 | |||||||||
7088 | |||||||||
7092 | |||||||||
Multi_point (39) | |||||||||
Pos_neg_data (17) | |||||||||
Reference (49) | |||||||||
Remark | Sequence connection from [Johnstone IL], [020809 krb] | ||||||||
Method | Gene |