WormBase Tree Display for Gene: WBGene00001073
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WBGene00001073 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F46E10 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | dpy-11 | Person_evidence | WBPerson261 | |||||
Sequence_name | F46E10.9 | ||||||||
Molecular_name | F46E10.9 | ||||||||
F46E10.9.1 | |||||||||
CE20819 | |||||||||
F46E10.9.2 | |||||||||
Other_name | CELE_F46E10.9 | Accession_evidence | NDB | BX284605 | |||||
Public_name | dpy-11 | ||||||||
DB_info | Database | AceView | gene | 5G992 | |||||
WormQTL | gene | WBGene00001073 | |||||||
WormFlux | gene | WBGene00001073 | |||||||
NDB | locus_tag | CELE_F46E10.9 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001073|UniProtKB=G5EC91 | |||||||
family | PTHR46107 | ||||||||
NCBI | gene | 179040 | |||||||
RefSeq | protein | NM_001383321.2 | |||||||
TREEFAM | TREEFAM_ID | TF106376 | |||||||
TrEMBL | UniProtAcc | G5EC91 | |||||||
UniProt_GCRP | UniProtAcc | G5EC91 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:22 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | dpy | ||||||||
Reference_allele | WBVar00143044 | ||||||||
Allele (97) | |||||||||
Legacy_information | e224 : medium dumpy. ES3 (adult) ES2 (larvae). ME2. NA > 10 (e33 e1180icr (these and most other alleles have much stronger dumpy ('piggy') phenotype) etc.). | ||||||||
See also e33, e752, e1180, e1194, s360 | |||||||||
[C.elegansII] e224 : medium dumpy. ES3 (adult) ES2 (larvae). ME2. Males Ram (lumpy rays) at25C. OA>10: e33, e1180icr (these and most other alleles have much stronger dumpy or 'piggy' phenotype) etc.), e455,e733, e752, s287 (induced on eT1), s10, s261, s360fdi etc. [Brenner 1974; Baird and Emmons 1990; CB] | |||||||||
Strain (139) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00011338 | ||||||||
00011339 | |||||||||
00011340 | |||||||||
00011341 | |||||||||
00011342 | |||||||||
00011343 | |||||||||
00011344 | |||||||||
00011345 | |||||||||
00011346 | |||||||||
Contained_in_operon | CEOP5120 | ||||||||
Ortholog (41) | |||||||||
Paralog (14) | |||||||||
Structured_description | Automated_description | Enables protein-disulfide reductase activity. Involved in several processes, including cuticle development involved in collagen and cuticulin-based cuticle molting cycle; post-embryonic body morphogenesis; and protein folding. Located in endomembrane system. Expressed in several structures, including R1_hyp; R2_hyp; R3_hyp; R4_hyp; and R5_hyp. Is an ortholog of human TMX1 (thioredoxin related transmembrane protein 1). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F46E10.9 | |||||||
Corresponding_transcript | F46E10.9.1 | ||||||||
F46E10.9.2 | |||||||||
Other_sequence | SRC06788_1 | ||||||||
FC816008.1 | |||||||||
SR02761 | |||||||||
Dviv_isotig17889 | |||||||||
MCC00579_1 | |||||||||
ES568742.1 | |||||||||
ES562334.1 | |||||||||
EX011613.1 | |||||||||
CBC00994_1 | |||||||||
CRC01022_1 | |||||||||
EX913316.1 | |||||||||
ACC19064_1 | |||||||||
AS01854 | |||||||||
HG03128 | |||||||||
EX008159.1 | |||||||||
HCC01336_1 | |||||||||
FC810582.1 | |||||||||
TSC11315_1 | |||||||||
Name_isotig03803 | |||||||||
TMC00769_1 | |||||||||
JO470277.1 | |||||||||
GO250125.1 | |||||||||
FK804639.1 | |||||||||
Tcir_isotig17143 | |||||||||
EG025434.1 | |||||||||
ES411955.1 | |||||||||
CRC05698_1 | |||||||||
BXC04266_1 | |||||||||
CBC03107_1 | |||||||||
HGC10358_1 | |||||||||
Tcol_isotig11387 | |||||||||
SRC01879_1 | |||||||||
HG03611 | |||||||||
HGC01217_1 | |||||||||
TSC00167_1 | |||||||||
SSC02418_1 | |||||||||
CR12149 | |||||||||
Dviv_isotig17890 | |||||||||
ASC09695_1 | |||||||||
Oden_isotig17877 | |||||||||
HBC01814_1 | |||||||||
FC820733.1 | |||||||||
TM01182 | |||||||||
OVC02310_1 | |||||||||
AI574570.1 | |||||||||
TS01939 | |||||||||
FC814653.1 | |||||||||
JI171338.1 | |||||||||
PE00189 | |||||||||
CJC00755_1 | |||||||||
EX013330.1 | |||||||||
MC00118 | |||||||||
XIC01484_1 | |||||||||
ES566483.1 | |||||||||
SRC08219_1 | |||||||||
SS00996 | |||||||||
Acan_isotig09721 | |||||||||
PEC00245_1 | |||||||||
EX014042.1 | |||||||||
HC00445 | |||||||||
BUC00492_1 | |||||||||
SS00448 | |||||||||
EY471957.1 | |||||||||
Tcol_isotig11386 | |||||||||
XI00930 | |||||||||
CRC10124_1 | |||||||||
Hbac_isotig01829 | |||||||||
Associated_feature (20) | |||||||||
Experimental_info | RNAi_result (20) | ||||||||
Expr_pattern | Chronogram1745 | ||||||||
Expr1854 | |||||||||
Expr1855 | |||||||||
Expr6089 | |||||||||
Expr13275 | |||||||||
Expr1026593 | |||||||||
Expr1030681 | |||||||||
Expr1151367 | |||||||||
Expr2011056 | |||||||||
Expr2029293 | |||||||||
Drives_construct | WBCnstr00002463 | ||||||||
WBCnstr00010487 | |||||||||
WBCnstr00010488 | |||||||||
WBCnstr00042718 | |||||||||
Construct_product | WBCnstr00010488 | ||||||||
Microarray_results (22) | |||||||||
Expression_cluster (192) | |||||||||
Interaction (155) | |||||||||
WBProcess | WBbiopr:00000124 | ||||||||
Map_info | Map | V | Position | 0 | |||||
Well_ordered | |||||||||
Positive | Inside_rearr | sDf20 | |||||||
sDf30 | |||||||||
nDf1 | |||||||||
nDf18 | |||||||||
rT1 | |||||||||
Positive_clone | F46E10 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
T04F11 | |||||||||
Negative | Outside_rearr | sDf36 | |||||||
eDf1 | |||||||||
nDf42 | |||||||||
Negative_clone | W01A11 | ||||||||
Mapping_data | 2_point (100) | ||||||||
Multi_point (259) | |||||||||
Pos_neg_data (15) | |||||||||
Landmark_gene | |||||||||
Reference (113) | |||||||||
Remark | Julia Pak rescued dpy-11 with T04F11 when she was a rotation student in my lab. | ||||||||
Sequence connection from [Ko F] | |||||||||
Method | Gene |