WormBase Tree Display for Gene: WBGene00001080

WBGene00001080 Evidence: Paper_evidence: WBPaper00006355
  SMap: S_parent: Sequence: Y59A8B
  Identity: Version: 1
    Name: CGC_name: dpy-21 Person_evidence: WBPerson261
      Sequence_name: Y59A8B.1
      Molecular_name: Y59A8B.1a
        Y59A8B.1a.1
        CE26205
        Y59A8B.1b
      Other_name: Y59A8B.c Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y59A8B.1 Accession_evidence: NDB BX284605
      Public_name: dpy-21
    DB_info: Database (13)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:23 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: dpy
    Reference_allele: WBVar00143205
    Allele (428)
    Legacy_information: e428 : weak dumpy (XX) non-dumpy (XO); lethal to 2A;3X. ES3 (adult) ES1 (larvae). ME3. NA3 (e459 (resembles e428) ct16 (very weak dumpy)).
      See also e428, e459, e1483
      [C.elegansII] e428 : weak dumpy (XX); non-dumpy (XO); lethal to 2A;3X. ES3 (adult) ES1 (larvae).Some X chromosome transcript levels elevated,in both XX and XO. ME3. OA2: e459 (resembles e428), ct16 (very weak phenotype). [Hodgkin 1983b; Meyer and Casson 1986; TY]
    Strain (20)
    RNASeq_FPKM (74)
    GO_annotation (12)
    Contained_in_operon: CEOP5552
    Ortholog: WBGene00069596 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00028049 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00150660 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00137687 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00227186 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g1212 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g9231 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g2393 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g4867 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g18411 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g3775 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g17010 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g8068 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g3655 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g23418 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00192.g6671 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-dpy-21 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g21877 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_06625.g36802 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_07179.g37463 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_20834 Caenorhabditis latens From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g02709 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_50407100 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g17585 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00241713 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00100951 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00265818 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00301862 Trichuris muris From_analysis: WormBase-Compara
      WBGene00301918 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0032717 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:25642 Homo sapiens From_analysis: Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:24765 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:2444993 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:3036237 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1307231 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1308748 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description (2)
  Molecular_info: Corresponding_CDS: Y59A8B.1a
    Corresponding_CDS_history: Y59A8B.1:wp139
    Corresponding_transcript: Y59A8B.1b
      Y59A8B.1a.1
    Other_sequence (17)
    Associated_feature: WBsf653522
      WBsf982072
      WBsf1002778
      WBsf1002779
      WBsf014601
  Experimental_info: RNAi_result (13)
    Expr_pattern: Expr2896
      Expr13514
      Expr1027959
      Expr1030687
      Expr1161165
      Expr2011064
      Expr2029301
    Regulate_expr_cluster: WBPaper00050370:dpy-21(e428)_L3_downregulated
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050801:DPY-21_dauer_regulome
    Antibody: WBAntibody00000707
      WBAntibody00000708
    Microarray_results (20)
    Expression_cluster (115)
    Interaction (71)
    WBProcess: WBbiopr:00000056
  Map_info: Map: V Position: 13.3323 Error: 0.006986
    Well_ordered
    Positive: Inside_rearr: ozDf1
      Positive_clone: Y59A8B Inferred_automatically: From sequence, transcript, pseudogene data
    Negative: Outside_rearr: ozDf2
    Mapping_data: 2_point (14)
      Multi_point (24)
      Pos_neg_data: 4305
        4291
        4292
        4293
        8970
        8983
    Landmark_gene
  Reference (124)
  Method: Gene