WormBase Tree Display for Gene: WBGene00001951
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| WBGene00001951 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T05G5 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | hlh-4 | Person_evidence | WBPerson346 | |||||
| Sequence_name | T05G5.2 | ||||||||
| Molecular_name | T05G5.2 | ||||||||
| T05G5.2.1 | |||||||||
| CE00314 | |||||||||
| T05G5.2.2 | |||||||||
| Other_name | CELE_T05G5.2 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | hlh-4 | ||||||||
| DB_info | Database | AceView | gene | 3K828 | |||||
| WormQTL | gene | WBGene00001951 | |||||||
| WormFlux | gene | WBGene00001951 | |||||||
| NDB | locus_tag | CELE_T05G5.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001951|UniProtKB=P34555 | |||||||
| family | PTHR13935 | ||||||||
| NCBI | gene | 176372 | |||||||
| RefSeq | protein | NM_001392180.1 | |||||||
| SwissProt | UniProtAcc | P34555 | |||||||
| TREEFAM | TREEFAM_ID | TF318164 | |||||||
| UniProt_GCRP | UniProtAcc | P34555 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hlh | ||||||||
| Allele (30) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (24) | |||||||||
| Paralog | WBGene00001950 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00001952 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001958 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enables DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and bHLH transcription factor binding activity. Involved in positive regulation of transcription by RNA polymerase II and response to food. Part of RNA polymerase II transcription regulator complex. Expressed in ABalppppaav; ABpraaapaav; ADLL; and ADLR. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T05G5.2 | |||||||
| Corresponding_transcript | T05G5.2.1 | ||||||||
| T05G5.2.2 | |||||||||
| Other_sequence | SRC01722_1 | ||||||||
| Acan_isotig17805 | |||||||||
| FC815589.1 | |||||||||
| Dviv_isotig12124 | |||||||||
| Dviv_isotig12123 | |||||||||
| SR02520 | |||||||||
| Associated_feature | WBsf651399 | ||||||||
| WBsf978568 | |||||||||
| Transcription_factor | WBTranscriptionFactor000082 | ||||||||
| WBTranscriptionFactor000065 | |||||||||
| Experimental_info | RNAi_result (13) | ||||||||
| Expr_pattern | Expr14319 | ||||||||
| Expr14320 | |||||||||
| Expr14594 | |||||||||
| Expr1019756 | |||||||||
| Expr1156180 | |||||||||
| Expr2012511 | |||||||||
| Expr2030750 | |||||||||
| Drives_construct | WBCnstr00036567 | ||||||||
| WBCnstr00039761 | |||||||||
| Construct_product | WBCnstr00016011 | ||||||||
| WBCnstr00021758 | |||||||||
| WBCnstr00022537 | |||||||||
| WBCnstr00036567 | |||||||||
| WBCnstr00039761 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (79) | |||||||||
| Interaction | WBInteraction000318108 | ||||||||
| WBInteraction000523893 | |||||||||
| WBInteraction000526354 | |||||||||
| WBInteraction000535000 | |||||||||
| WBInteraction000535052 | |||||||||
| WBInteraction000535155 | |||||||||
| WBInteraction000535331 | |||||||||
| WBInteraction000548495 | |||||||||
| Map_info | Map | III | Position | 0.934331 | Error | 0.003588 | |||
| Positive | Positive_clone | T05G5 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4435 | |||||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
