WormBase Tree Display for Gene: WBGene00001954
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| WBGene00001954 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | ZK682 | ||||||
| Identity | Version | 3 | |||||||
| Name | CGC_name | hlh-10 | Person_evidence | WBPerson346 | |||||
| Sequence_name | ZK682.4 | ||||||||
| Molecular_name | ZK682.4 | ||||||||
| ZK682.4.1 | |||||||||
| CE47615 | |||||||||
| Other_name | CeABF-1 | ||||||||
| CELE_ZK682.4 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | hlh-10 | ||||||||
| DB_info | Database | AceView | gene | 5J758 | |||||
| WormQTL | gene | WBGene00001954 | |||||||
| WormFlux | gene | WBGene00001954 | |||||||
| NDB | locus_tag | CELE_ZK682.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001954|UniProtKB=Q23579 | |||||||
| family | PTHR23349 | ||||||||
| NCBI | gene | 191402 | |||||||
| RefSeq | protein | NM_073000.4 | |||||||
| SwissProt | UniProtAcc | Q23579 | |||||||
| UniProt_GCRP | UniProtAcc | Q23579 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 3 | 11 Mar 2021 09:37:10 | WBPerson1983 | Name_change | Other_name | CeABF-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hlh | ||||||||
| Allele (27) | |||||||||
| Strain | WBStrain00002261 | ||||||||
| WBStrain00031463 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00001953 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00001962 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00001957 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00001981 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00001956 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Automated_description | Enables protein heterodimerization activity and transcription corepressor activity. Involved in negative regulation of transcription by RNA polymerase II. Located in cytoplasm and nucleus. Expressed in ADLL; ADLR; ASEL; ASER; and neurons. Human ortholog(s) of this gene implicated in coronary artery disease and ventricular septal defect. Is an ortholog of human MSC (musculin) and TCF21 (transcription factor 21). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:1657 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11632) | ||||
| DOID:3393 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11632) | ||||||
| Molecular_info | Corresponding_CDS | ZK682.4 | |||||||
| Corresponding_CDS_history | ZK682.4:wp231 | ||||||||
| Corresponding_transcript | ZK682.4.1 | ||||||||
| Other_sequence | CJC01351_1 | ||||||||
| Associated_feature | WBsf652900 | ||||||||
| WBsf652901 | |||||||||
| WBsf978808 | |||||||||
| WBsf1000852 | |||||||||
| WBsf1000853 | |||||||||
| WBsf1000854 | |||||||||
| WBsf1020148 | |||||||||
| Transcription_factor | WBTranscriptionFactor000067 | ||||||||
| WBTranscriptionFactor000077 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00038417 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00059660 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022129 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram385 | ||||||||
| Expr1673 | |||||||||
| Expr2960 | |||||||||
| Expr7899 | |||||||||
| Expr14595 | |||||||||
| Expr1011155 | |||||||||
| Expr1163072 | |||||||||
| Expr2012490 | |||||||||
| Expr2030729 | |||||||||
| Drives_construct | WBCnstr00004463 | ||||||||
| WBCnstr00011045 | |||||||||
| WBCnstr00012976 | |||||||||
| WBCnstr00036564 | |||||||||
| WBCnstr00041175 | |||||||||
| Construct_product | WBCnstr00016001 | ||||||||
| WBCnstr00036564 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (56) | |||||||||
| Interaction (25) | |||||||||
| Map_info | Map | V | Position | 1.974 | Error | 0.002284 | |||
| Positive | Positive_clone | ZK682 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4405 | |||||||
| 5401 | |||||||||
| 5405 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00010373 | ||||||||
| WBPaper00010818 | |||||||||
| WBPaper00013489 | |||||||||
| WBPaper00027309 | |||||||||
| WBPaper00030829 | |||||||||
| WBPaper00034761 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049921 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
