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WormBase Tree Display for Gene: WBGene00001980

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Name Class

WBGene00001980SMapS_parentSequenceCHROMOSOME_I
IdentityVersion1
NameCGC_namehmr-1Person_evidenceWBPerson498
Sequence_nameW02B9.1
Molecular_name (13)
Other_nameCELE_W02B9.1Accession_evidenceNDBBX284601
Public_namehmr-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:26WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhmr
AlleleWBVar00275537Inferred_automaticallyFrom strain object: JJ1142
WBVar02148933
WBVar00275546
WBVar00345308
WBVar01476147
WBVar00670706
WBVar00670521
WBVar01476148
WBVar00670707
WBVar00670522
WBVar00345309
WBVar00670523
WBVar00314373
WBVar01476149
WBVar00670708
WBVar00345310
WBVar00670524
WBVar00345311
WBVar00670709
WBVar01476150
WBVar01947992
WBVar00314374
WBVar00670525
WBVar00670710
WBVar00345312
WBVar01476151
WBVar00670711
WBVar00065665
WBVar00670526
WBVar01476152
WBVar01782789
WBVar00345313
WBVar00670527
WBVar00670712
WBVar00345314
WBVar01476153
WBVar00670713
WBVar01476154
WBVar00670528
WBVar00345315
WBVar00317439
WBVar00670529
WBVar01476155
WBVar00345316
WBVar00670714
WBVar00670530
WBVar00670715
WBVar00345317
WBVar01476156
WBVar00345318
WBVar00670531
WBVar01993321
WBVar00670716
WBVar01476157
WBVar01993322
WBVar00670717
WBVar01476158
WBVar00345319
WBVar00670532
WBVar00670718
WBVar01993323
WBVar01476159
WBVar00670533
WBVar00345320
WBVar01476160
WBVar00670719
WBVar01993324
WBVar00345321
WBVar00670534
WBVar00670535
WBVar00670720
WBVar00215902
WBVar01993325
WBVar00345322
WBVar01476161
WBVar01982174
WBVar00670721
WBVar00215903
WBVar00670536
WBVar01476162
WBVar01993326
WBVar00345323
WBVar02093562
WBVar00670722
WBVar00670537
WBVar01476163
WBVar00215904
WBVar01993327
WBVar00345324
WBVar02093563
WBVar00670538
WBVar00670723
WBVar00215905
WBVar00345325
WBVar00307540
WBVar01993329
WBVar02102580
WBVar00670539
WBVar02001806
WBVar00345326
WBVar00670724
WBVar00215906
WBVar02001807
WBVar00670540
WBVar00345327
WBVar00215907
WBVar00670725
WBVar00345328
WBVar02001808
WBVar00670726
WBVar00670541
WBVar02001809
WBVar00670727
WBVar00345329
WBVar00670542
WBVar00670728
WBVar02001810
WBVar02071547
WBVar00670543
WBVar00345330
WBVar00670544
WBVar02001811
WBVar00670729
WBVar00598046
WBVar00345331
WBVar02001812
WBVar00101166
WBVar00670545
WBVar00670730
WBVar00345332
WBVar00670546
WBVar00670731
WBVar02001813
WBVar00345333
WBVar00345334
WBVar00317702
WBVar00670547
WBVar02001814
WBVar00670732
WBVar00345335
WBVar00670733
WBVar00670548
WBVar02001815
WBVar00670734
WBVar00670549
WBVar02001816
WBVar00670735
WBVar01900343
WBVar02001817
WBVar00670550
WBVar02001818
WBVar00670736
WBVar00670551
WBVar00670737
WBVar02001819
WBVar00670552
WBVar01348442
WBVar00670738
WBVar02001820
WBVar00670554
WBVar00670739
WBVar00670555
WBVar01957704
WBVar02097259
WBVar01348443
WBVar01932477
WBVar02001821
WBVar00670556
WBVar01957707
WBVar02001822
WBVar01932478
WBVar00670740
WBVar01932479
WBVar02001823
WBVar00670557
WBVar01957709
WBVar00670741
WBVar02001824
WBVar01957710
WBVar01932480
WBVar01348465
WBVar00670558
WBVar02095422
WBVar00670742
WBVar00670559
WBVar01957711
WBVar01493296
WBVar01932482
WBVar00670743
WBVar00101179
WBVar02001825
WBVar00670744
WBVar00670560
WBVar01957713
WBVar02001826
WBVar01932483
WBVar01499739
WBVar02001827
WBVar00670561
WBVar01957714
WBVar01932484
WBVar00670745
WBVar00670746
WBVar01957715
WBVar02001828
WBVar01932485
WBVar00670562
WBVar01957716
WBVar02001829
WBVar01932486
WBVar01694860
WBVar00670563
WBVar00670747
WBVar01957717
WBVar00670564
WBVar01932487
WBVar00670748
WBVar02001830
WBVar01932488
WBVar00670749
WBVar00670565
WBVar02001831
WBVar01957718
WBVar02001832
WBVar00670566
WBVar01957720
WBVar01932489
WBVar00670750
WBVar00216268
WBVar00670751
WBVar00670567
WBVar01932492
WBVar02001833
WBVar02120092
WBVar00670752
WBVar00670568
WBVar01932494
WBVar00670753
WBVar00670569
WBVar01339444
WBVar01932495
WBVar01932497
WBVar00670754
WBVar00670570
WBVar00670571
WBVar00670755
WBVar01932498
WBVar00670572
WBVar00670756
WBVar00670573
WBVar00670757
WBVar00670574
WBVar00670758
WBVar00101194
WBVar00670759
WBVar00670575
WBVar01622917
WBVar00670760
WBVar01622918
WBVar00670576
WBVar00670761
WBVar01622919
WBVar00670577
WBVar00670578
WBVar00670762
WBVar01894809
WBVar00670763
WBVar00670579
WBVar00670580
WBVar00670764
WBVar00670765
WBVar00670581
WBVar00308655
WBVar00670582
WBVar00670766
WBVar00308656
WBVar01488903
WBVar00670583
WBVar00670767
WBVar00670399
WBVar00670584
WBVar00670768
WBVar01399075
WBVar00321402
WBVar00670585
WBVar00670769
WBVar00670400
WBVar00670586
WBVar00670401
WBVar00670770
WBVar00670402
WBVar00670771
WBVar00670587
WBVar00670403
WBVar00670772
WBVar00670588
WBVar00670589
WBVar00670773
WBVar00670404
WBVar00670590
WBVar00670405
WBVar00670774
WBVar02016378
WBVar01602995
WBVar00670406
WBVar00670775
WBVar00670591
WBVar02016379
WBVar00670776
WBVar00670592
WBVar00670407
WBVar02016381
WBVar01910354
WBVar00670777
WBVar00670593
WBVar00670408
WBVar02016382
WBVar00670778
WBVar00156811
WBVar00670409
WBVar00670594
WBVar00156812
WBVar00670595
WBVar00670779
WBVar00670410
WBVar00156813
WBVar00670411
WBVar00670596
WBVar00670597
WBVar00670412
WBVar00156814
WBVar02009864
WBVar00670413
WBVar00670598
WBVar00156815
WBVar00670414
WBVar00670599
WBVar00156816
WBVar01914729
WBVar01762367
WBVar01762368
WBVar00156817
WBVar02083872
WBVar00670415
WBVar00670600
WBVar01762369
WBVar00156818
WBVar00670416
WBVar00670601
WBVar01574066
WBVar00670602
WBVar00156819
WBVar01762370
WBVar00670417
WBVar00670603
WBVar01988522
WBVar00156820
WBVar00670418
WBVar01988523
WBVar00670604
WBVar00156821
WBVar00670419
WBVar00670605
WBVar00670420
WBVar01988525
WBVar00156822
WBVar00670421
WBVar00156823
WBVar01423633
WBVar00670606
WBVar01988526
WBVar00156824
WBVar00670422
WBVar01423644
WBVar00670607
WBVar01423655
WBVar00670423
WBVar00670608
WBVar00156825
WBVar02111668
WBVar01423666
WBVar00670424
WBVar00156826
WBVar00670609
WBVar01423677
WBVar01499788
WBVar00670425
WBVar00670610
WBVar00156827
WBVar00670426
WBVar00670611
WBVar00156828
WBVar00345213
WBVar01663005
WBVar00345214
WBVar00670427
WBVar00156829
WBVar02066409
WBVar01499054
WBVar00670612
WBVar02066410
WBVar00156830
WBVar00670428
WBVar01663006
WBVar00345215
WBVar01423688
WBVar00670613
WBVar01423699
WBVar00670429
WBVar00156831
WBVar00345216
WBVar01663007
WBVar00670614
WBVar02066411
WBVar00670615
WBVar01423722
WBVar00670430
WBVar00156832
WBVar00345217
WBVar01663008
WBVar02066412
WBVar00670616
WBVar00670431
WBVar00345218
WBVar02066413
WBVar00156833
WBVar01663009
WBVar00670432
WBVar01663010
WBVar00670617
WBVar00345219
WBVar02066414
WBVar00156834
WBVar01822926
WBVar00670433
WBVar00670618
WBVar01663011
WBVar02066415
WBVar00345220
WBVar00156835
WBVar00156836
WBVar00345221
WBVar00670434
WBVar02066416
WBVar01663012
WBVar00670619
WBVar00156837
WBVar02066417
WBVar01663013
WBVar00670620
WBVar00670435
WBVar00345222
WBVar02066418
WBVar00345223
WBVar00156838
WBVar01663014
WBVar00670621
WBVar00670436
WBVar02066419
WBVar01663015
WBVar00670622
WBVar00156839
WBVar00345224
WBVar00670437
WBVar00670438
WBVar01663016
WBVar00670623
WBVar00156840
WBVar00345225
WBVar00670624
WBVar00670439
WBVar01663017
WBVar00156841
WBVar00345226
WBVar00156842
WBVar00345227
WBVar00670625
WBVar00670440
WBVar01663018
WBVar00345228
WBVar00156843
WBVar01663019
WBVar00670626
WBVar00670441
WBVar01403417
WBVar00670442
WBVar00261962
WBVar00345229
WBVar00670627
WBVar00156844
WBVar01663020
WBVar01403418
WBVar00670443
WBVar00345230
WBVar00156845
WBVar01911868
WBVar00670628
WBVar01403419
WBVar00101064
WBVar01663021
WBVar00670444
WBVar00101065
WBVar00670629
WBVar01911869
WBVar00156846
WBVar01663022
WBVar00345231
WBVar01911870
WBVar00670630
WBVar00101066
WBVar01663023
WBVar00345232
WBVar00670445
WBVar01500544
WBVar00156847
WBVar01663024
WBVar00345233
WBVar00670446
WBVar00670631
WBVar00101067
WBVar01826441
WBVar01911871
WBVar00156848
WBVar00670447
WBVar00670632
WBVar01663025
WBVar00345234
WBVar00156849
WBVar01911872
WBVar00345235
WBVar01663026
WBVar01432951
WBVar00670633
WBVar00670448
WBVar00253869
WBVar01411741
WBVar00156850
WBVar00670449
WBVar01432952
WBVar01663027
WBVar00345236
WBVar00670634
WBVar02150408
WBVar00156851
WBVar01663028
WBVar00156852
WBVar01432953
WBVar00345237
WBVar00670635
WBVar01998823
WBVar00670450
WBVar01663029
WBVar00670451
WBVar01432954
WBVar00345238
WBVar00253872
WBVar00670636
WBVar00670637
WBVar00345239
WBVar00264732
WBVar00670452
WBVar01663030
WBVar01432955
WBVar00670453
WBVar00670638
WBVar00345240
WBVar01432956
WBVar01495031
WBVar01663031
WBVar01432957
WBVar01344301
WBVar00345241
WBVar00670454
WBVar00670639
WBVar01495032
WBVar01663032
WBVar00345242
WBVar00670455
WBVar01663033
WBVar01432958
WBVar00670640
WBVar01432959
WBVar01663034
WBVar00345243
WBVar01344312
WBVar01498530
WBVar00264000
WBVar00670641
WBVar00670456
WBVar00345244
WBVar00670457
WBVar01663035
WBVar00670642
WBVar01432960
WBVar00670643
WBVar00246578
WBVar00345245
WBVar00670458
WBVar01663036
WBVar01432961
WBVar01344323
WBVar00670459
WBVar00670644
WBVar01663037
WBVar01432962
WBVar00345246
WBVar01432964
WBVar00670645
WBVar00670460
WBVar00345247
WBVar01663038
WBVar01344334
WBVar01432965
WBVar01663039
WBVar00670646
WBVar01890032
WBVar00670461
WBVar00345248
WBVar00670462
WBVar01432966
WBVar01663040
WBVar00670647
WBVar02088703
WBVar00539122
WBVar01344345
WBVar00345249
WBVar01890033
WBVar01663041
WBVar00670463
WBVar01432967
WBVar00345250
WBVar00539126
WBVar01890034
WBVar00670648
WBVar00345251
WBVar00670649
WBVar00670464
WBVar00539130
WBVar01713044
WBVar01432968
WBVar01344356
WBVar01890035
WBVar02014183
WBVar01663042
WBVar01713045
WBVar00345252
WBVar01890036
WBVar00539132
WBVar01344367
WBVar02014184
WBVar00670465
WBVar01432969
WBVar01663043
WBVar00670650
WBVar00670651
WBVar01713046
WBVar01663044
WBVar02028487
WBVar01432970
WBVar01890037
WBVar00670466
WBVar00345253
WBVar00539134
WBVar01890038
WBVar00539137
WBVar01663045
WBVar00670652
WBVar01432971
WBVar00345254
WBVar02028488
WBVar00670467
WBVar01663046
WBVar01890039
WBVar00670653
WBVar00539138
WBVar01432972
WBVar01344379
WBVar00670468
WBVar00600965
WBVar00345255
WBVar00257388
WBVar01890040
WBVar00670469
WBVar01663047
WBVar00345256
WBVar00670654
WBVar01344390
WBVar01432973
WBVar01663048
WBVar00670470
WBVar01890041
WBVar00345257
WBVar00670655
WBVar01432975
WBVar00345258
WBVar00670471
WBVar01344401
WBVar01663049
WBVar01432976
WBVar00670656
WBVar01890042
WBVar02011920
WBVar00345259
WBVar00670472
WBVar01890043
WBVar01663050
WBVar00670657
WBVar00670658
WBVar00345260
WBVar00670473
WBVar01663051
WBVar01344412
WBVar01890044
WBVar00670474
WBVar01663052
WBVar00670659
WBVar00345261
WBVar01284256
WBVar01890045
WBVar00670660
WBVar00670475
WBVar01890046
WBVar01284257
WBVar01344423
WBVar02128476
WBVar01663053
WBVar00345262
WBVar01284258
WBVar01663054
WBVar02128477
WBVar01890047
WBVar00670476
WBVar00670661
WBVar00345263
WBVar02128478
WBVar01890048
WBVar00670477
WBVar00345264
WBVar01284260
WBVar00670662
WBVar01663055
WBVar02128479
WBVar01890049
WBVar00670478
WBVar00670663
WBVar00345265
WBVar01284261
WBVar01663056
WBVar01663057
WBVar01284263
WBVar00345266
WBVar00670479
WBVar01890050
WBVar02128480
WBVar00670664
WBVar01284264
WBVar01890051
WBVar02080440
WBVar02128481
WBVar00345267
WBVar00670665
WBVar01663058
WBVar00670480
WBVar00345268
WBVar00670666
WBVar01890052
WBVar01284267
WBVar02128482
WBVar00670481
WBVar00345269
WBVar00670667
WBVar02128483
WBVar01284268
WBVar01890053
WBVar00670482
WBVar00670483
WBVar00670668
WBVar00345270
WBVar01890054
WBVar02128484
WBVar01284269
WBVar00670484
WBVar00670669
WBVar01284270
WBVar00601186
WBVar01890055
WBVar02128485
WBVar00345271
WBVar01284271
WBVar00670485
WBVar00670670
WBVar01532162
WBVar01890056
WBVar02128486
WBVar00345272
WBVar01284272
WBVar00670486
WBVar00670671
WBVar00345273
WBVar01532163
WBVar02073736
WBVar01890057
WBVar02128487
WBVar01890058
WBVar01532164
WBVar02128488
WBVar00345274
WBVar02073737
WBVar00670672
WBVar00670487
WBVar00345275
WBVar01890059
WBVar01532165
WBVar00670673
WBVar00670488
WBVar00345276
WBVar00670674
WBVar00670489
WBVar01532166
WBVar01532167
WBVar00670490
WBVar00345277
WBVar00670675
WBVar00670676
WBVar00670491
WBVar01532168
WBVar00345278
WBVar01492125
WBVar00670677
WBVar00670492
WBVar00345279
WBVar01532169
WBVar00345280
WBVar00670493
WBVar01392071
WBVar00670678
WBVar00670494
WBVar01392072
WBVar00266431
WBVar00670679
WBVar00309637
WBVar00345281
WBVar00345282
WBVar00670680
WBVar01392073
WBVar00670495
WBVar01556418
WBVar00670681
WBVar01392074
WBVar00345283
WBVar00319571
WBVar00670496
WBVar01556419
WBVar00670682
WBVar01392075
WBVar00345284
WBVar00670497
WBVar00345285
WBVar02116711
WBVar00670683
WBVar00670498
WBVar01641134
WBVar00345286
WBVar00670499
WBVar00670684
WBVar00670500
WBVar01641135
WBVar00345287
WBVar00670685
WBVar00345288
WBVar00670686
WBVar00237049
WBVar00670501
WBVar00237050
WBVar00670687
WBVar00670502
WBVar00345289
WBVar00670688
WBVar00345290
WBVar00670503
WBVar00670689
WBVar00345291
WBVar00670504
WBVar00670505
WBVar00670690
WBVar00345292
WBVar00670506
WBVar00345293
WBVar00670691
WBVar00345294
WBVar00670507
WBVar00670692
WBVar00670508
WBVar00345295
WBVar00670693
WBVar00345296
WBVar01908058
WBVar00670694
WBVar00670509
WBVar00277415
WBVar00670695
WBVar00670510
WBVar00345297
WBVar00670696
WBVar00670511
WBVar00345298
WBVar00670512
WBVar00345299
WBVar00670697
WBVar00670513
WBVar00670698
WBVar00345300
WBVar00670514
WBVar00670699
WBVar00345301
WBVar00670515
WBVar00345302
WBVar00216183
WBVar00670700
WBVar00345303
WBVar01498959
WBVar00670701
WBVar00670516
WBVar02079547
WBVar00345304
WBVar00670702
WBVar00670517
WBVar00670703
WBVar00345305
WBVar00670518
WBVar00345306
WBVar00670704
WBVar00670519
WBVar00670705
WBVar00345307
WBVar00670520
StrainWBStrain00033419
WBStrain00024209
WBStrain00024233
WBStrain00034583
WBStrain00037750
WBStrain00022481
WBStrain00022484
RNASeq_FPKM (74)
GO_annotation (45)
Ortholog (43)
ParalogWBGene00001475Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017576Caenorhabditis elegansFrom_analysisPanther
WBGene00022103Caenorhabditis elegansFrom_analysisPanther
WBGene00014914Caenorhabditis elegansFrom_analysismodENCODE_Pseudogenes
WormBase-Compara
Structured_descriptionConcise_descriptionhmr-1 encodes two isoforms of a classical cadherin that contain extracellular cadherin, EGF-like, and laminin G domains as well as a highly conserved intracellular domain that binds beta-catenin; by homology, the HMR-1 proteins are predicted to function as calcium-dependent, homophilic cell-cell adhesion receptors; in vivo, HMR-1A activity is required for mediating the cell migrations, cell shape changes, and presumably actin cytoskeleton rearrangements that occur during embryonic tissue and body morphogenesis; HMR-1B is required for fasciculation and outgrowth of a subset of motor neuron processes; HMR-1 antibodies detect expression in all embryonic blastomeres at early stages of development but as hypodermal adherens junctions form and morphogenesis begins, HMR-1 becomes highly expressed in the apical junctions of all hypodermal cells; later, HMR-1 is expressed primarily at the apical margins of hypodermal, pharyngeal, and intestinal cells in a pattern consistent with localization to adherens junctions; an HMR-1B reporter fusion is expressed in neurons, including the DD, VD, and AS class of motor neurons; HMR-1 activity is required for proper localization of other junctional components, such as HMP-1/alpha-catenin and HMP-2/beta-catenin, but not for localization of AJM-1, the junctional component recognized by the MH27 antibody.Paper_evidenceWBPaper00003046
WBPaper00005031
WBPaper00013424
WBPaper00040399
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated16 Nov 2011 00:00:00
Automated_descriptionEnables beta-catenin binding activity and delta-catenin binding activity. Involved in cytoskeleton organization; embryo development; and gastrulation. Located in adherens junction; distal dendrite; and plasma membrane. Part of catenin complex. Expressed in several structures, including germline precursor cell; hypodermis; motor neurons; nerve ring; and neuroblasts.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSW02B9.1a
W02B9.1b
W02B9.1d
W02B9.1e
Corresponding_CDS_historyW02B9.1a:wp229
W02B9.1c:wp274
Corresponding_transcriptW02B9.1a.1
W02B9.1a.2
W02B9.1b.1
W02B9.1d.1
W02B9.1e.1
Other_sequence (52)
Associated_feature (71)
Experimental_infoRNAi_result (61)
Expr_pattern (17)
Drives_construct (11)
Construct_productWBCnstr00006080
WBCnstr00010445
WBCnstr00014624
WBCnstr00014629
WBCnstr00014630
WBCnstr00014636
WBCnstr00020940
WBCnstr00021692
WBCnstr00021693
WBCnstr00023099
AntibodyWBAntibody00000169
WBAntibody00002173
WBAntibody00002591
WBAntibody00002643
WBAntibody00002693
Microarray_results (38)
Expression_cluster (173)
Interaction (109)
WBProcessWBbiopr:00000073
Map_infoMapIPosition6.60962Error0.05706
PositivePositive_cloneW02B9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4410
4851
4818
5481
Pseudo_map_position
Reference (111)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene