WormBase Tree Display for Gene: WBGene00001980
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WBGene00001980 | SMap | S_parent | Sequence | CHROMOSOME_I | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | hmr | ||||||
Allele (936) | |||||||
Strain | WBStrain00033419 | ||||||
WBStrain00024209 | |||||||
WBStrain00024233 | |||||||
WBStrain00034583 | |||||||
WBStrain00037750 | |||||||
WBStrain00022481 | |||||||
WBStrain00022484 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (45) | |||||||
Ortholog (43) | |||||||
Paralog | WBGene00001475 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
WBGene00017576 | Caenorhabditis elegans | From_analysis | Panther | ||||
WBGene00022103 | Caenorhabditis elegans | From_analysis | Panther | ||||
WBGene00014914 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||
WormBase-Compara | |||||||
Structured_description | Concise_description | hmr-1 encodes two isoforms of a classical cadherin that contain extracellular cadherin, EGF-like, and laminin G domains as well as a highly conserved intracellular domain that binds beta-catenin; by homology, the HMR-1 proteins are predicted to function as calcium-dependent, homophilic cell-cell adhesion receptors; in vivo, HMR-1A activity is required for mediating the cell migrations, cell shape changes, and presumably actin cytoskeleton rearrangements that occur during embryonic tissue and body morphogenesis; HMR-1B is required for fasciculation and outgrowth of a subset of motor neuron processes; HMR-1 antibodies detect expression in all embryonic blastomeres at early stages of development but as hypodermal adherens junctions form and morphogenesis begins, HMR-1 becomes highly expressed in the apical junctions of all hypodermal cells; later, HMR-1 is expressed primarily at the apical margins of hypodermal, pharyngeal, and intestinal cells in a pattern consistent with localization to adherens junctions; an HMR-1B reporter fusion is expressed in neurons, including the DD, VD, and AS class of motor neurons; HMR-1 activity is required for proper localization of other junctional components, such as HMP-1/alpha-catenin and HMP-2/beta-catenin, but not for localization of AJM-1, the junctional component recognized by the MH27 antibody. | Paper_evidence | WBPaper00003046 | |||
WBPaper00005031 | |||||||
WBPaper00013424 | |||||||
WBPaper00040399 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
WBPerson567 | |||||||
Date_last_updated | 16 Nov 2011 00:00:00 | ||||||
Automated_description | Enables beta-catenin binding activity and delta-catenin binding activity. Involved in cytoskeleton organization; embryo development; and gastrulation. Located in adherens junction; distal dendrite; and plasma membrane. Part of catenin complex. Expressed in several structures, including germline precursor cell; hypodermis; motor neurons; nerve ring; and neuroblasts. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | W02B9.1a | |||||
W02B9.1b | |||||||
W02B9.1d | |||||||
W02B9.1e | |||||||
Corresponding_CDS_history | W02B9.1a:wp229 | ||||||
W02B9.1c:wp274 | |||||||
Corresponding_transcript | W02B9.1a.1 | ||||||
W02B9.1a.2 | |||||||
W02B9.1b.1 | |||||||
W02B9.1d.1 | |||||||
W02B9.1e.1 | |||||||
Other_sequence (52) | |||||||
Associated_feature (71) | |||||||
Experimental_info | RNAi_result (61) | ||||||
Expr_pattern (17) | |||||||
Drives_construct (11) | |||||||
Construct_product | WBCnstr00006080 | ||||||
WBCnstr00010445 | |||||||
WBCnstr00014624 | |||||||
WBCnstr00014629 | |||||||
WBCnstr00014630 | |||||||
WBCnstr00014636 | |||||||
WBCnstr00020940 | |||||||
WBCnstr00021692 | |||||||
WBCnstr00021693 | |||||||
WBCnstr00023099 | |||||||
Antibody | WBAntibody00000169 | ||||||
WBAntibody00002173 | |||||||
WBAntibody00002591 | |||||||
WBAntibody00002643 | |||||||
WBAntibody00002693 | |||||||
Microarray_results (38) | |||||||
Expression_cluster (173) | |||||||
Interaction (109) | |||||||
WBProcess | WBbiopr:00000073 | ||||||
Map_info | Map | I | Position | 6.60962 | Error | 0.05706 | |
Positive | Positive_clone | W02B9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 4410 | |||||
4851 | |||||||
4818 | |||||||
5481 | |||||||
Pseudo_map_position | |||||||
Reference (111) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |