WormBase Tree Display for Gene: WBGene00002123
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| WBGene00002123 | SMap | S_parent | Sequence | C16E9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | inx-1 | Person_evidence | WBPerson247 | |||||
| Sequence_name | C16E9.4 | ||||||||
| Molecular_name (13) | |||||||||
| Other_name | opu-1 | ||||||||
| pcr55 | Accession_evidence | EMBL | U59212 | ||||||
| CELE_C16E9.4 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | inx-1 | ||||||||
| DB_info | Database | AceView | gene | XH564 | |||||
| WormQTL | gene | WBGene00002123 | |||||||
| WormFlux | gene | WBGene00002123 | |||||||
| NDB | locus_tag | CELE_C16E9.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00002123|UniProtKB=Q17394 | |||||||
| family | PTHR11893 | ||||||||
| NCBI | gene | 180968 | |||||||
| RefSeq | protein | NR_131721.1 | |||||||
| NM_171716.5 | |||||||||
| NM_001029236.3 | |||||||||
| NR_131724.1 | |||||||||
| NR_131723.1 | |||||||||
| NR_131722.1 | |||||||||
| TrEMBL | UniProtAcc | Q17394 | |||||||
| Q8IG52 | |||||||||
| UniProt_GCRP | UniProtAcc | Q17394 | |||||||
| RNAcentral | URSid | URS000078EAF2 | |||||||
| URS00007A175D | |||||||||
| URS00007ADD04 | |||||||||
| URS00007B1CC4 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | inx | ||||||||
| Allele (220) | |||||||||
| Strain | WBStrain00054739 | ||||||||
| WBStrain00054740 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (38) | |||||||||
| Paralog (24) | |||||||||
| Structured_description | Concise_description | inx-1 encodes a predicted member of the innexin family; expressed in 4-6 anterior neurons. | Paper_evidence | WBPaper00005286 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable gap junction channel activity. Predicted to be involved in monoatomic ion transmembrane transport. Located in gap junction. Expressed in neurons and pm1. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C16E9.4a | |||||||
| C16E9.4b | |||||||||
| Corresponding_CDS_history | C16E9.4a:wp86 | ||||||||
| C16E9.4b:wp86 | |||||||||
| Corresponding_transcript | C16E9.4c | ||||||||
| C16E9.4d | |||||||||
| C16E9.4e | |||||||||
| C16E9.4f | |||||||||
| C16E9.4a.1 | |||||||||
| C16E9.4a.2 | |||||||||
| C16E9.4a.3 | |||||||||
| C16E9.4b.1 | |||||||||
| C16E9.4b.2 | |||||||||
| Other_sequence (42) | |||||||||
| Associated_feature (28) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00040745 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00010874 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027682 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040746 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040742 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1944 | ||||||||
| Expr8669 | |||||||||
| Expr11350 | |||||||||
| Expr11352 | |||||||||
| Expr15819 | |||||||||
| Expr1027697 | |||||||||
| Expr1031242 | |||||||||
| Expr1144787 | |||||||||
| Expr2012794 | |||||||||
| Expr2031033 | |||||||||
| Drives_construct | WBCnstr00010535 | ||||||||
| WBCnstr00013435 | |||||||||
| WBCnstr00016937 | |||||||||
| WBCnstr00018793 | |||||||||
| WBCnstr00018949 | |||||||||
| WBCnstr00022576 | |||||||||
| WBCnstr00036436 | |||||||||
| Construct_product | WBCnstr00018795 | ||||||||
| WBCnstr00036436 | |||||||||
| Antibody | WBAntibody00000517 | ||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (183) | |||||||||
| Interaction | WBInteraction000039552 | ||||||||
| WBInteraction000049176 | |||||||||
| WBInteraction000320056 | |||||||||
| Map_info | Map | X | Position | -1.9496 | Error | 0.019346 | |||
| Positive | Positive_clone | C16E9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4441 | |||||||
| 4531 | |||||||||
| 5477 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (21) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
