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WormBase Tree Display for Gene: WBGene00003040

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Name Class

WBGene00003040SMapS_parentSequenceT12F5
IdentityVersion1
NameCGC_namelin-59Person_evidenceWBPerson261
Sequence_nameT12F5.4
Molecular_nameT12F5.4
T12F5.4.1
CE13601
Other_nameCELE_T12F5.4Accession_evidenceNDBBX284601
Public_namelin-59
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:30WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlin
Allele (110)
Legacy_information[Chamberlin HM] sa489 males have abnormal tail development, with altered F and U cell lineages. F and U also abnormal in hermaphrodite.
StrainWBStrain00022835
WBStrain00029537
WBStrain00005831
RNASeq_FPKM (74)
GO_annotation (26)
OrthologWBGene00062311Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00033032Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00153489Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00123699Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00160599Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00062392Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00222977Brugia malayiFrom_analysisWormBase-Compara
WBGene00226014Brugia malayiFrom_analysisWormBase-Compara
WBGene00226798Brugia malayiFrom_analysisWormBase-Compara
WBGene00230701Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g9304Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g6155Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g4294Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g6914Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g1885Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g20273Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g13424Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g325Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g9832Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g16448Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00042.g2311Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-lin-59Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold627.g6730Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00111.g4604Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_08194Caenorhabditis latensFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g11999Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g11610Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10158300Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g560Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00237385Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00238265Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00246807Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00291387Trichuris murisFrom_analysisWormBase-Compara
WBGene00296004Trichuris murisFrom_analysisWormBase-Compara
WBGene00302914Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0005386Drosophila melanogasterFrom_analysisOrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-030131-6101Danio rerioFrom_analysisOrthoInspector
SonicParanoid
HGNC:19088Homo sapiensFrom_analysisOrthoInspector
SonicParanoid
MGI:2183158Mus musculusFrom_analysisOrthoInspector
SonicParanoid
RGD:1306350Rattus norvegicusFrom_analysisOrthoInspector
SonicParanoid
Paralog (19)
Structured_descriptionConcise_descriptionlin-59 encodes a SET domain-containing protein that is most closely related to the ASH1 group of histone-lysine N-methyltransferases; lin-59 was originally identified in screens for mutations that disrupt male tail development and subsequently was shown to be an essential gene required for development and fate specification of a number of different cells types, including those of the male tail, male and hermaphrodite hindgut, and egg-laying system; lin-59 has been shown to positively regulate expression of at least four genes: cdh-3, egl-5, mab-5, and nac-2; a lin-59::gfp reporter fusion is first expressed during the proliferative stage of embryonic development and expression continues, in most cells, throughout larval development and adulthood.Paper_evidenceWBPaper00003719
WBPaper00003938
Curator_confirmedWBPerson1843
Date_last_updated27 Mar 2008 00:00:00
Automated_descriptionPredicted to enable histone H3K36 methyltransferase activity. Involved in several processes, including ectodermal cell fate specification; egg-laying behavior; and nematode male tail tip morphogenesis. Predicted to be located in nucleus. Predicted to be part of chromatin. Expressed in hypodermis; intestine; and muscle cell. Used to study leukemia. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 52. Is an ortholog of human ASH1L (ASH1 like histone lysine methyltransferase).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoExperimental_modelDOID:1240Homo sapiensPaper_evidenceWBPaper00032952
Curator_confirmedWBPerson38202
Date_last_updated13 Jun 2018 00:00:00
Potential_modelDOID:0080231Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:19088)
Models_disease_assertedWBDOannot00000546
Molecular_infoCorresponding_CDST12F5.4
Corresponding_transcriptT12F5.4.1
Other_sequence (20)
Associated_feature (15)
Transcription_factorWBTranscriptionFactor000311
Experimental_infoRNAi_result (19)
Expr_patternExpr658
Expr14359
Expr1025648
Expr1031425
Expr1156808
Expr2013195
Expr2031427
Drives_constructWBCnstr00012479
WBCnstr00036267
Construct_productWBCnstr00036267
Microarray_results (18)
Expression_cluster (131)
Interaction (126)
Map_infoMapIPosition-2.83104Error0.022529
Well_ordered
PositiveInside_rearrqDf3
Positive_cloneT12F5Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point3669
3670
3671
3672
3782
4354
4429
Pos_neg_data10214
Reference (22)
MethodGene