WormBase Tree Display for Gene: WBGene00003056

WBGene00003056 SMap: S_parent: Sequence: CHROMOSOME_X
  Identity: Version: 1
    Name: CGC_name: lon-2 Person_evidence: WBPerson261
      Sequence_name: C39E6.1
      Molecular_name: C39E6.1
        C39E6.1.1
        CE35426
      Other_name: CELE_C39E6.1 Accession_evidence: NDB BX284606
      Public_name: lon-2
    DB_info: Database: AceView gene XF356
        WormQTL gene WBGene00003056
        WormFlux gene WBGene00003056
        NDB locus_tag CELE_C39E6.1
        Panther gene CAEEL|WormBase=WBGene00003056|UniProtKB=Q18530
          family PTHR10822
        NCBI gene 180750
        RefSeq protein NM_076411.8
        TREEFAM TREEFAM_ID TF353541
        TrEMBL UniProtAcc Q18530
        UniProt_GCRP UniProtAcc Q18530
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:30 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lon
    Reference_allele: WBVar00143398
    Allele (213)
    Legacy_information: e678 : about 50% longer than wildtype at all stages. ES3. Male bursa slightly elongated ME3 (ME0 at 25x?). NA5 (e405 e434 etc. : similar phenotype to e678).
      [C.elegansII] e678 : about 50% longer than wildtype at all stages; some embryonic lethality; ES3. Male bursa slightly elongated, ME3 (ME0 at25C?). OA4: e405, e434, n1346, n1630 etc. (allsimilar to e678). [Brenner 1974]
    Strain (224)
    RNASeq_FPKM (74)
    GO_annotation (19)
    Ortholog: WBGene00051787 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00034998 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00192620 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00137492 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g2322 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g15836 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g21997 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g19071 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g15518 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g23403 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g8399 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g13023 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g26704 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g12416 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-lon-2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold622.g6300 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00053.g2681 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_00616 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_024311 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_X0250700 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g18964 Caenorhabditis elegans From_analysis: WormBase-Compara
      ZFIN:ZDB-GENE-031212-1 Danio rerio From_analysis: Panther
            SonicParanoid
      ZFIN:ZDB-GENE-140106-260 Danio rerio From_analysis: Panther
            SonicParanoid
      ZFIN:ZDB-GENE-141112-1 Danio rerio From_analysis: Panther
            SonicParanoid
      ZFIN:ZDB-GENE-060503-64 Danio rerio From_analysis: Panther
            SonicParanoid
    Structured_description (2)
  Molecular_info: Corresponding_CDS: C39E6.1
    Corresponding_CDS_history: C39E6.1:wp107
    Corresponding_transcript: C39E6.1.1
    Other_sequence: CRC07010_1
      CR09868
      CGC00490_1
      CBC13859_1
      CJC03031_1
      CRC04307_1
    Associated_feature (15)
  Experimental_info: RNAi_result (23)
    Expr_pattern: Expr4651
      Expr4652
      Expr12191
      Expr1011265
      Expr1031435
      Expr1146202
      Expr2013244
      Expr2031475
    Drives_construct: WBCnstr00012150
      WBCnstr00012151
      WBCnstr00021097
      WBCnstr00021479
      WBCnstr00036259
    Construct_product: WBCnstr00012151
      WBCnstr00021471
      WBCnstr00021474
      WBCnstr00021479
      WBCnstr00036259
    Microarray_results (21)
    Expression_cluster (142)
    Interaction (24)
  Map_info: Map: X Position: -6.74013 Error: 0.007834
    Well_ordered
    Positive: Inside_rearr: mnDp30
        yDp4
      Positive_clone: C39E6 Inferred_automatically: From sequence, transcript, pseudogene data
        F43C9
    Negative: Outside_rearr: mcDf2
    Mapping_data: 2_point (57)
      Multi_point (150)
      Pos_neg_data: 935
        1859
        1888
        1912
        1928
        1944
        1960
        1976
        1992
        2019
        2040
        2051
        2058
        2174
        2175
        2178
        2362
        5453
        5834
        4564
        8420
        8422
        8429
        8433
        8441
        8446
        8450
        8456
        8475
        10694
        10695
    Landmark_gene
  Reference (155)
  Remark: sequence wsa incorrectly given as F43C9.3
  Method: Gene