WormBase Tree Display for Gene: WBGene00003271
expand all nodes | collapse all nodes | view schema
| WBGene00003271 | Evidence | Paper_evidence | WBPaper00004928 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | ZK930 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-43 | Person_evidence | WBPerson18 | |||||
| Sequence_name | ZK930.9 | ||||||||
| Molecular_name | ZK930.9 | ||||||||
| ZK930.9a | |||||||||
| ZK930.9b | |||||||||
| Other_name | cel-mir-43 | Remark | miRBase V21 import | ||||||
| Cel-Mir-2-o11 | Remark | MirGeneDB 2.1 import | |||||||
| CELE_ZK930.9 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | mir-43 | ||||||||
| DB_info | Database | miRBase | acc | MI0000014 | |||||
| SignaLink | mirna | cel-mir-43 | |||||||
| MirGeneDB | cel | Cel-Mir-2-o11 | |||||||
| NDB | locus_tag | CELE_ZK930.9 | |||||||
| NCBI | gene | 260039 | |||||||
| RefSeq | protein | NR_000929.2 | |||||||
| RNAcentral | URSid | URS0000298122 | |||||||
| URS00003E4CF2 | |||||||||
| URS00005C4A02 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele | WBVar01499702 | ||||||||
| WBVar01498613 | |||||||||
| WBVar01498435 | |||||||||
| WBVar00323157 | |||||||||
| WBVar00145584 | |||||||||
| WBVar00772002 | |||||||||
| WBVar00772003 | |||||||||
| WBVar00772004 | |||||||||
| WBVar01498941 | |||||||||
| In_cluster | MIR-2 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-43 encodes a microRNA, a small non-protein coding RNA and is conserved in C. briggsae; mir-43 is part of the mir-42-mir-44 cluster of miRNAs; mir-43 is expressed predominantly in the embryo; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of mir-43 is not known. | Paper_evidence | WBPaper00004927 | |||||
| WBPaper00004928 | |||||||||
| WBPaper00005825 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 18 Jan 2005 00:00:00 | ||||||||
| Automated_description | Expressed in germ line and seam cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | ZK930.9 | |||||||
| ZK930.9a | |||||||||
| ZK930.9b | |||||||||
| Other_sequence | AJ487567 | ||||||||
| Experimental_info | Expr_pattern | Expr1661 | |||||||
| Expr2538 | |||||||||
| Expr8332 | |||||||||
| Drives_construct | WBCnstr00009667 | ||||||||
| WBCnstr00013264 | |||||||||
| Expression_cluster (20) | |||||||||
| Interaction | WBInteraction000503777 | ||||||||
| WBInteraction000541200 | |||||||||
| WBInteraction000542491 | |||||||||
| Map_info | Map | II | Position | 4.13388 | Error | 0.000773 | |||
| Positive | Inside_rearr | nDf49 | |||||||
| Positive_clone | ZK930 | Inferred_automatically | From CDS info | ||||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Pos_neg_data | 10912 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004927 | ||||||||
| WBPaper00004928 | |||||||||
| WBPaper00005825 | |||||||||
| WBPaper00031335 | |||||||||
| WBPaper00032188 | |||||||||
| WBPaper00035664 | |||||||||
| WBPaper00061786 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
