WormBase Tree Display for Gene: WBGene00003286
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| WBGene00003286 | Evidence | Paper_evidence | WBPaper00004928 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y67D8A | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | mir-58.1 | Person_evidence | WBPerson18 | |||||
| Sequence_name | Y67D8A.4 | ||||||||
| Molecular_name | Y67D8A.4 | ||||||||
| Y67D8A.4a | |||||||||
| Y67D8A.4b | |||||||||
| Other_name | cel-mir-58a | Remark | miRBase V21 import | ||||||
| mir-58a | Remark | miRBase V21 import | |||||||
| mir-58 | Remark | Other_name changed August 2014 | |||||||
| Cel-Bantam-P1 | Remark | MirGeneDB 2.1 import | |||||||
| CELE_Y67D8A.4 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | mir-58.1 | ||||||||
| DB_info | Database | miRBase | acc | MI0000029 | |||||
| SignaLink | mirna | cel-mir-58 | |||||||
| MirGeneDB | cel | Cel-Bantam-P1 | |||||||
| NDB | locus_tag | CELE_Y67D8A.4 | |||||||
| NCBI | gene | 260181 | |||||||
| RefSeq | protein | NR_000454.2 | |||||||
| RNAcentral | URSid | URS0000123C51 | |||||||
| URS00004DE969 | |||||||||
| URS0000766CCC | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 01 Aug 2014 15:54:20 | WBPerson1983 | Name_change | CGC_name | mir-58.1 | ||||
| Other_name | mir-58 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele | WBVar02151441 | ||||||||
| WBVar00090890 | |||||||||
| WBVar02151678 | |||||||||
| WBVar02151687 | |||||||||
| WBVar01498316 | |||||||||
| WBVar01499789 | |||||||||
| WBVar01499633 | |||||||||
| WBVar00897401 | |||||||||
| WBVar00897402 | |||||||||
| Strain | WBStrain00027508 | ||||||||
| WBStrain00027525 | |||||||||
| WBStrain00027592 | |||||||||
| WBStrain00027593 | |||||||||
| WBStrain00007202 | |||||||||
| WBStrain00007203 | |||||||||
| WBStrain00007204 | |||||||||
| WBStrain00007205 | |||||||||
| WBStrain00007209 | |||||||||
| In_cluster | BANTAM | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-58.1 encodes a microRNA, a small non-protein coding RNA and is conserved in C. briggsae; mir-58.1 is expressed constitutively throughout development in normal worms and in glp-4(bn2) adults; many of the known microRNAs are involved in post-transcriptional regulation of genes. | Paper_evidence | WBPaper00004927 | |||||
| WBPaper00004928 | |||||||||
| WBPaper00005825 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 20 Jan 2005 00:00:00 | ||||||||
| Automated_description | Expressed in several structures, including excretory cell; hypodermis; intestine; pharynx; and spermatheca. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | Y67D8A.4 | |||||||
| Y67D8A.4a | |||||||||
| Y67D8A.4b | |||||||||
| Gene_product_binds | WBsf977969 | ||||||||
| WBsf977970 | |||||||||
| WBsf977971 | |||||||||
| WBsf977972 | |||||||||
| Experimental_info | Expr_pattern | Expr2488 | |||||||
| Expr8461 | |||||||||
| Expr10927 | |||||||||
| Expr12847 | |||||||||
| Expr12855 | |||||||||
| Drives_construct | WBCnstr00013307 | ||||||||
| WBCnstr00022898 | |||||||||
| WBCnstr00022906 | |||||||||
| Regulate_expr_cluster | WBPaper00064080:miR-58_miRNA_interacting | ||||||||
| Expression_cluster (25) | |||||||||
| Interaction (14) | |||||||||
| Map_info | Map | IV | Position | -5.44068 | Error | 0.089176 | |||
| Positive | Positive_clone | Y67D8A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (23) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
