WormBase Tree Display for Gene: WBGene00003290
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WBGene00003290 | Evidence | Paper_evidence | WBPaper00004928 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | T07C5 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | mir-62 | Person_evidence | WBPerson18 | |||||
Sequence_name | T07C5.6 | ||||||||
Molecular_name | T07C5.6 | ||||||||
T07C5.6b | |||||||||
Other_name | cel-mir-62 | Remark | miRBase V21 import | ||||||
MirGeneDB 2.1 import | |||||||||
CELE_T07C5.6 | Accession_evidence | NDB | BX284606 | ||||||
Public_name | mir-62 | ||||||||
DB_info | Database | miRBase | acc | MI0000033 | |||||
SignaLink | mirna | cel-mir-62 | |||||||
MirGeneDB | cel | Cel-Mir-62 | |||||||
NDB | locus_tag | CELE_T07C5.6 | |||||||
NCBI | gene | 259984 | |||||||
RefSeq | protein | NR_001269.2 | |||||||
RNAcentral | URSid | URS000012AD0E | |||||||
URS000054ECE7 | |||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001265 | |||||||
Gene_class | mir | ||||||||
Allele | WBVar01499887 | ||||||||
WBVar01499888 | |||||||||
WBVar01499710 | |||||||||
WBVar02144080 | |||||||||
WBVar02146670 | |||||||||
WBVar00090858 | |||||||||
WBVar01196429 | |||||||||
WBVar01498960 | |||||||||
WBVar01500067 | |||||||||
Strain | WBStrain00027577 | ||||||||
In_cluster | MIR-62 | ||||||||
RNASeq_FPKM (74) | |||||||||
Structured_description | Concise_description | mir-62 encodes a microRNA, a small non-protein coding RNA and is conserved in C. briggsae; mir-62 belongs to the mir-50 family of miRNAs based on RNA sequence; mir-62 is expressed constitutively throughout development in normal worms and in glp-4(bn2) adults; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of mir-62 is not known. | Paper_evidence | WBPaper00004927 | |||||
WBPaper00004928 | |||||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 20 Jan 2005 00:00:00 | ||||||||
Automated_description | Is affected by several genes including prg-1; alg-1; and alg-2 based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_transcript | T07C5.6 | |||||||
T07C5.6b | |||||||||
Other_sequence | AJ487586 | ||||||||
Experimental_info | RNAi_result | WBRNAi00052735 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00002096 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00035296 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00052736 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr2469 | ||||||||
Expr10906 | |||||||||
Expression_cluster (19) | |||||||||
WBProcess | WBbiopr:00000081 | ||||||||
Map_info | Map | X | Position | 7.78235 | Error | 0.031695 | |||
Positive | Positive_clone | T07C5 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00004927 | ||||||||
WBPaper00004928 | |||||||||
WBPaper00005825 | |||||||||
WBPaper00024441 | |||||||||
WBPaper00030805 | |||||||||
WBPaper00031335 | |||||||||
WBPaper00032187 | |||||||||
WBPaper00042641 | |||||||||
WBPaper00061983 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |