WormBase Tree Display for Gene: WBGene00003328
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| WBGene00003328 | Evidence | Paper_evidence | WBPaper00005879 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPaper00005825 | |||||||||
| SMap | S_parent | Sequence | T09B4 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-235 | Person_evidence | WBPerson18 | |||||
| Sequence_name | T09B4.12 | ||||||||
| Molecular_name | T09B4.12 | ||||||||
| T09B4.12a | |||||||||
| T09B4.12b | |||||||||
| Other_name | cel-mir-235 | Remark | miRBase V21 import | ||||||
| Cel-Mir-92 | Remark | MirGeneDB 2.1 import | |||||||
| CELE_T09B4.12 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | mir-235 | ||||||||
| DB_info | Database | miRBase | acc | MI0000310 | |||||
| SignaLink | mirna | cel-mir-235 | |||||||
| MirGeneDB | cel | Cel-Mir-92 | |||||||
| NDB | locus_tag | CELE_T09B4.12 | |||||||
| NCBI | gene | 3565583 | |||||||
| RefSeq | protein | NR_002349.2 | |||||||
| RNAcentral | URSid | URS0000136EAA | |||||||
| URS00001BEF2D | |||||||||
| URS0000318156 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele | WBVar02122995 | ||||||||
| WBVar00090850 | |||||||||
| WBVar01499786 | |||||||||
| WBVar01499054 | |||||||||
| WBVar00642291 | |||||||||
| WBVar00335729 | |||||||||
| WBVar01498959 | |||||||||
| WBVar01500249 | |||||||||
| Strain | WBStrain00027584 | ||||||||
| In_cluster | MIR-92 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-235 encodes a microRNA, a small non-protein coding RNA and may have a potential ortholog in C. briggsae; based on RNA sequence identity miR-235 belongs to the miR-25 family of microRNAs that also includes the human microRNAs miR-92-1, miR-92-2, miR-25-1, miR-25-2 and miR-32; miR-235 is weakly expressed at all stages of development in normal worms and in glp-4(bn2) mutant worms; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-235 is unknown. | Paper_evidence | WBPaper00005825 | |||||
| WBPaper00005879 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 08 Feb 2005 00:00:00 | ||||||||
| Automated_description | Expressed in AMsoL; AMsoR; and hypodermis. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | T09B4.12 | |||||||
| T09B4.12a | |||||||||
| T09B4.12b | |||||||||
| Associated_feature | WBsf047553 | ||||||||
| WBsf979089 | |||||||||
| Experimental_info | Expr_pattern | Expr2473 | |||||||
| Expr8419 | |||||||||
| Expr10948 | |||||||||
| Expr11010 | |||||||||
| Drives_construct | WBCnstr00005534 | ||||||||
| WBCnstr00017595 | |||||||||
| Expression_cluster (30) | |||||||||
| Interaction | WBInteraction000520120 | ||||||||
| WBInteraction000520121 | |||||||||
| WBInteraction000520122 | |||||||||
| WBInteraction000520123 | |||||||||
| WBInteraction000520124 | |||||||||
| WBInteraction000541201 | |||||||||
| WBInteraction000542163 | |||||||||
| WBInteraction000542241 | |||||||||
| WBInteraction000542246 | |||||||||
| WBInteraction000544769 | |||||||||
| Map_info | Map | I | Position | 0.84296 | Error | 0.010005 | |||
| Positive | Positive_clone | T09B4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
