WormBase Tree Display for Gene: WBGene00003838
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| WBGene00003838 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ocr-1 | Person_evidence | WBPerson42 | |||||
| Sequence_name | F28H7.10 | ||||||||
| Molecular_name | F28H7.10a | ||||||||
| F28H7.10a.1 | |||||||||
| CE51877 | |||||||||
| F28H7.10b | |||||||||
| CE40048 | |||||||||
| F28H7.10b.1 | |||||||||
| Other_name | CELE_F28H7.10 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | ocr-1 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00003838 | |||||
| WormFlux | gene | WBGene00003838 | |||||||
| NDB | locus_tag | CELE_F28H7.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003838|UniProtKB=G5EDR9 | |||||||
| family | PTHR10582 | ||||||||
| NCBI | gene | 185101 | |||||||
| RefSeq | protein | NM_001047642.1 | |||||||
| NM_001348583.2 | |||||||||
| TREEFAM | TREEFAM_ID | TF314711 | |||||||
| TrEMBL | UniProtAcc | Q1NZ21 | |||||||
| G5EDR9 | |||||||||
| UniProt_GCRP | UniProtAcc | G5EDR9 | |||||||
| OMIM | gene | 606680 | |||||||
| 607066 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ocr | ||||||||
| Allele (52) | |||||||||
| Strain | WBStrain00026384 | ||||||||
| WBStrain00026393 | |||||||||
| WBStrain00026395 | |||||||||
| WBStrain00005262 | |||||||||
| WBStrain00005263 | |||||||||
| WBStrain00007483 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00003889 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003839 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003840 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003841 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | ocr-1 encodes a transient receptor potential (TRP) channel; an OCR-1::GFP reporter fusion is expressed in the amphid sensory neurons AWA and ADL. | Paper_evidence | WBPaper00005350 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 18 May 2012 00:00:00 | ||||||||
| Automated_description | Enables temperature-gated cation channel activity. Involved in heat acclimation. Predicted to be located in membrane. Expressed in ADLL; ADLR; AWAL; and AWAR. Human ortholog(s) of this gene implicated in several diseases, including keratosis (multiple); migraine with aura; and rosacea. Is an ortholog of human TRPV5 (transient receptor potential cation channel subfamily V member 5) and TRPV6 (transient receptor potential cation channel subfamily V member 6). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:9256 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18084) | ||||
| DOID:10024 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18084) | ||||||
| DOID:11714 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14006,HGNC:3145) | ||||||
| DOID:10591 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14006,HGNC:3145) | ||||||
| DOID:0112013 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18084) | ||||||
| DOID:13543 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14006) | ||||||
| DOID:8881 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18084) | ||||||
| DOID:0111711 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18084) | ||||||
| DOID:0050534 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18084) | ||||||
| DOID:5419 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18084) | ||||||
| Molecular_info | Corresponding_CDS | F28H7.10a | |||||||
| F28H7.10b | |||||||||
| Corresponding_CDS_history | F28H7.10a:wp176 | ||||||||
| F28H7.10a:wp257 | |||||||||
| Corresponding_transcript | F28H7.10a.1 | ||||||||
| F28H7.10b.1 | |||||||||
| Other_sequence | MIC04495_1 | ||||||||
| Acan_isotig12849 | |||||||||
| Oden_isotig13002 | |||||||||
| JI180503.1 | |||||||||
| Oden_isotig13004 | |||||||||
| Dviv_isotig27670 | |||||||||
| Oden_isotig24097 | |||||||||
| MI05202 | |||||||||
| Oden_isotig13003 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00045878 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00014080 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1982 | ||||||||
| Expr15394 | |||||||||
| Expr1018073 | |||||||||
| Expr1149782 | |||||||||
| Expr2014596 | |||||||||
| Expr2032829 | |||||||||
| Drives_construct | WBCnstr00010556 | ||||||||
| WBCnstr00035842 | |||||||||
| Construct_product | WBCnstr00010556 | ||||||||
| WBCnstr00035842 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (48) | |||||||||
| Interaction | WBInteraction000052665 | ||||||||
| WBInteraction000052913 | |||||||||
| WBInteraction000169538 | |||||||||
| WBInteraction000169577 | |||||||||
| WBInteraction000388238 | |||||||||
| WBInteraction000518011 | |||||||||
| WBInteraction000518012 | |||||||||
| WBInteraction000518013 | |||||||||
| Map_info | Map | V | Position | 2.75796 | Error | 0.001756 | |||
| Positive | Positive_clone | F28H7 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4554 | |||||||
| Pseudo_map_position | |||||||||
| Reference (22) | |||||||||
| Remark | Gene name created on basis of email from [Schwarz E], citing paper by [Tobin DM] et al. [krb 020721] | ||||||||
| Method | Gene |
