WormBase Tree Display for Gene: WBGene00004242
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| WBGene00004242 | SMap | S_parent | Sequence | F18A11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | puf-6 | Person_evidence | WBPerson320 | |||||
| Sequence_name | F18A11.1 | ||||||||
| Molecular_name | F18A11.1 | ||||||||
| F18A11.1.1 | |||||||||
| CE09451 | |||||||||
| Other_name | CELE_F18A11.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | puf-6 | ||||||||
| DB_info | Database | AceView | gene | 2N330 | |||||
| WormQTL | gene | WBGene00004242 | |||||||
| WormFlux | gene | WBGene00004242 | |||||||
| NDB | locus_tag | CELE_F18A11.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004242|UniProtKB=O01322 | |||||||
| family | PTHR12537 | ||||||||
| NCBI | gene | 174947 | |||||||
| RefSeq | protein | NM_064372.8 | |||||||
| SwissProt | UniProtAcc | O01322 | |||||||
| TREEFAM | TREEFAM_ID | TF318622 | |||||||
| UniProt_GCRP | UniProtAcc | O01322 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | puf | ||||||||
| Allele (92) | |||||||||
| Strain | WBStrain00032931 | ||||||||
| WBStrain00054791 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Contained_in_operon | CEOP2768 | ||||||||
| Ortholog (28) | |||||||||
| Paralog | WBGene00001401 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001402 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004239 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004240 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| WBGene00004241 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004245 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004243 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00022257 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004244 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | The puf-6 gene encodes a predicted RNA binding protein that is a member of the conserved PUF (Pumilio and FBF) family of RNA binding proteins; PUF-6 appears to function redundantly with other PUF family members during primordial germ cell development, and interacts with GEX-3, a predicted transmembrane protein that is essential for embryonic tissue morphogenesis. | Paper_evidence | WBPaper00003762 | |||||
| WBPaper00005194 | |||||||||
| WBPaper00006101 | |||||||||
| WBPaper00017836 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable mRNA 3'-UTR binding activity. Involved in germ cell development and negative regulation of cell population proliferation. Predicted to be located in cytoplasm and nucleus. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F18A11.1 | |||||||
| Corresponding_transcript | F18A11.1.1 | ||||||||
| Other_sequence | CBC02867_1 | ||||||||
| CR00978 | |||||||||
| CR05769 | |||||||||
| CRC06411_1 | |||||||||
| Associated_feature | WBsf019215 | ||||||||
| WBsf666290 | |||||||||
| WBsf666291 | |||||||||
| WBsf224140 | |||||||||
| Experimental_info | RNAi_result (21) | ||||||||
| Expr_pattern | Expr1032093 | ||||||||
| Expr1148884 | |||||||||
| Expr2015189 | |||||||||
| Expr2033423 | |||||||||
| Drives_construct | WBCnstr00035612 | ||||||||
| Construct_product | WBCnstr00035612 | ||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (167) | |||||||||
| Interaction (192) | |||||||||
| Map_info | Map | II | Position | 13.8292 | Error | 0.079661 | |||
| Positive | Positive_clone | F18A11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (18) | |||||||||
| Remark | sequence connection from [Bernstein M, Wickens MP] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
