WormBase Tree Display for Gene: WBGene00004243
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| WBGene00004243 | SMap | S_parent | Sequence | B0273 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | puf-7 | Person_evidence | WBPerson320 | |||||
| Sequence_name | B0273.2 | ||||||||
| Molecular_name | B0273.2 | ||||||||
| B0273.2.1 | |||||||||
| CE16788 | |||||||||
| Other_name | CELE_B0273.2 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | puf-7 | ||||||||
| DB_info | Database | AceView | gene | 4G253 | |||||
| WormQTL | gene | WBGene00004243 | |||||||
| WormFlux | gene | WBGene00004243 | |||||||
| NDB | locus_tag | CELE_B0273.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004243|UniProtKB=O44169 | |||||||
| family | PTHR12537 | ||||||||
| NCBI | gene | 177332 | |||||||
| RefSeq | protein | NM_068419.7 | |||||||
| SwissProt | UniProtAcc | O44169 | |||||||
| TREEFAM | TREEFAM_ID | TF318622 | |||||||
| UniProt_GCRP | UniProtAcc | O44169 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | puf | ||||||||
| Allele (45) | |||||||||
| Strain | WBStrain00022616 | ||||||||
| WBStrain00031393 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (28) | |||||||||
| Paralog | WBGene00001401 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001402 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004239 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004240 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| WBGene00004241 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004242 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004245 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00004246 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| WBGene00022257 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004244 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | puf-7 encodes a protein 97% identical to PUF-6 and functions redundantly with the other PUF genes, fbf-1, fbf-2, puf-6, and puf-8, during primordial germ cell development, based on combinatorial RNAi; interacts with NOS-2 in yeast two-hybrid screens. | Paper_evidence | WBPaper00012443 | |||||
| WBPaper00017836 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable mRNA 3'-UTR binding activity. Involved in germ cell development. Predicted to be located in cytoplasm and nucleus. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0273.2 | |||||||
| Corresponding_transcript | B0273.2.1 | ||||||||
| Other_sequence | CRC10707_1 | ||||||||
| CBC01049_1 | |||||||||
| CR10010 | |||||||||
| CRC05211_1 | |||||||||
| CR01630 | |||||||||
| CRC04496_1 | |||||||||
| Tcol_isotig13761 | |||||||||
| Associated_feature | WBsf019216 | ||||||||
| WBsf645975 | |||||||||
| WBsf228312 | |||||||||
| WBsf228313 | |||||||||
| Experimental_info | RNAi_result (23) | ||||||||
| Expr_pattern | Expr1010630 | ||||||||
| Expr1143033 | |||||||||
| Expr2015190 | |||||||||
| Expr2033424 | |||||||||
| Drives_construct | WBCnstr00035611 | ||||||||
| Construct_product | WBCnstr00035611 | ||||||||
| Microarray_results | SMD_B0273.2 | ||||||||
| 194176_x_at | |||||||||
| A_12_P106441 | |||||||||
| Aff_B0273.2 | |||||||||
| GPL13394_WBGene00004243 | |||||||||
| GPL13914_B0273.2 | |||||||||
| GPL8304_CE_WBGene00004243_B | |||||||||
| GPL8304_CE_WBGene00004243_C | |||||||||
| Expression_cluster (186) | |||||||||
| Interaction (261) | |||||||||
| Map_info | Map | IV | Position | 1.73506 | Error | 0.010941 | |||
| Positive | Positive_clone | B0273 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4614 | |||||||
| Pos_neg_data | 10890 | ||||||||
| Pseudo_map_position | |||||||||
| Reference (15) | |||||||||
| Remark | sequence connection from [Bernstein M, Wickens MP] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
