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WormBase Tree Display for Gene: WBGene00004350

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Name Class

WBGene00004350SMapS_parentSequenceF56B6
Identity (6)
Gene_infoBiotypeSO:0001217
Gene_classrgs
Allele (194)
StrainWBStrain00026370
WBStrain00026372
WBStrain00032622
WBStrain00034758
RNASeq_FPKM (74)
GO_annotation00021823
00021824
00021825
00085200
00085201
OrthologWBGene00051966Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00034799Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00132514Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00148896Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00147994Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00151582Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00129549Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00059606Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00163868Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00224721Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g3132Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g10921Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g3894Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g10460Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g5909Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g8981Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g5052Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g15633Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g25474Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g16250Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00024.g1464Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_X.g23899Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g18187Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01603.g22010Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_00819Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_024115Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g01358Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_X0268900Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g18773Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00238802Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00305150Pristionchus pacificusFrom_analysisWormBase-Compara
ZFIN:ZDB-GENE-040718-264Danio rerioFrom_analysisOrthoFinder
Panther
PhylomeDB
ZFIN:ZDB-GENE-040801-150Danio rerioFrom_analysisOrthoFinder
Panther
PhylomeDB
HGNC:9991Homo sapiensFrom_analysisOrthoFinder
Panther
PhylomeDB
HGNC:10000Homo sapiensFrom_analysisOrthoFinder
Panther
PhylomeDB
HGNC:9995Homo sapiensFrom_analysisOrthoFinder
Panther
PhylomeDB
HGNC:14261Homo sapiensFrom_analysisOrthoFinder
Panther
PhylomeDB
HGNC:16810Homo sapiensFrom_analysisOrthoFinder
Panther
PhylomeDB
Paralog (12)
Structured_descriptionConcise_descriptionrgs-7 encodes three isoforms of an atypical regulator of G protein signaling (RGS) protein that contains both a C2 and an RGS domain, and that binds EGL-30 via both domains, similar in organization to mammalian PDZ-RGS3; the RGS domain has GTPase activator protein (GAP) activity in vitro on mammalian G[alphai]3; RGS-7 thus may stably bind EGL-30 at all stages of EGL-30's GTPase cycle, might organize EGL-30 into a stable multiprotein signalling complex (with GTP[gamma]S), and might persistently inhibit EGL-30 when triggered by calcium or phospholipids; rgs-7 has no obvious function in mass RNAi assaysPaper_evidenceWBPaper00005654
WBPaper00005958
WBPaper00013066
Curator_confirmedWBPerson567
Date_last_updated18 Jun 2007 00:00:00
Automated_descriptionEnables GTPase activator activity. Predicted to be involved in negative regulation of signal transduction. Located in cell cortex. Is an ortholog of several human genes including RGS1 (regulator of G protein signaling 1); RGS13 (regulator of G protein signaling 13); and RGS4 (regulator of G protein signaling 4).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF56B6.2a
F56B6.2b
F56B6.2c
F56B6.2e
F56B6.2f
F56B6.2g
F56B6.2h
F56B6.2i
F56B6.2j
Corresponding_CDS_historyF56B6.2d:wp271
Corresponding_transcriptF56B6.2a.1
F56B6.2b.1
F56B6.2c.1
F56B6.2e.1
F56B6.2f.1
F56B6.2g.1
F56B6.2h.1
F56B6.2i.1
F56B6.2j.1
Other_sequence (21)
Associated_feature (27)
Experimental_infoRNAi_resultWBRNAi00048645Inferred_automaticallyRNAi_primary
WBRNAi00048644Inferred_automaticallyRNAi_primary
WBRNAi00032932Inferred_automaticallyRNAi_primary
WBRNAi00015785Inferred_automaticallyRNAi_primary
Expr_patternExpr3108
Expr1025711
Expr1032168
Expr1152407
Expr1200208
Expr2015330
Expr2033564
Drives_constructWBCnstr00011142
WBCnstr00035547
Construct_productWBCnstr00011142
WBCnstr00035547
Microarray_results (53)
Expression_cluster (147)
Interaction (11)
WBProcessWBbiopr:00000017
Map_infoMapXPosition-10.1117Error0.033929
PositivePositive_cloneF56B6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point5042
Pseudo_map_position
ReferenceWBPaper00004281
WBPaper00010184
WBPaper00010619
WBPaper00010738
WBPaper00019732
WBPaper00024480
WBPaper00024864
WBPaper00025439
WBPaper00027230
WBPaper00027672
WBPaper00029025
WBPaper00032337
WBPaper00033032
WBPaper00038491
WBPaper00051799
WBPaper00055090
WBPaper00055830
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene