WormBase Tree Display for Gene: WBGene00004802
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WBGene00004802 | SMap | S_parent | Sequence | F46G10 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | sir-2.3 | Person_evidence | WBPerson1840 | |||||
Sequence_name | F46G10.3 | ||||||||
Molecular_name | F46G10.3 | ||||||||
F46G10.3.1 | |||||||||
CE02239 | |||||||||
F46G10.3.2 | |||||||||
Other_name | CELE_F46G10.3 | Accession_evidence | NDB | BX284606 | |||||
Public_name | sir-2.3 | ||||||||
DB_info | Database (12) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | sir | ||||||||
Allele (33) | |||||||||
Strain | WBStrain00031395 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (16) | |||||||||
Ortholog (28) | |||||||||
Paralog | WBGene00004801 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Inparanoid_8 | |||||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00004800 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00004803 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | sir-2.3 encodes one of four C. elegans proteins with similarity to the Saccharomyces cerevisiae Sir2p NAD-dependent histone deacetylase. | Paper_evidence | WBPaper00004566 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 11 May 2009 00:00:00 | ||||||||
Automated_description | Predicted to enable histone deacetylase activity. Predicted to be involved in chromatin remodeling. Located in mitochondrion. Expressed in body wall musculature; head; pharynx; and somatic gonad. Is an ortholog of human SIRT4 (sirtuin 4). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F46G10.3 | |||||||
Corresponding_transcript | F46G10.3.1 | ||||||||
F46G10.3.2 | |||||||||
Other_sequence (12) | |||||||||
Associated_feature | WBsf648661 | ||||||||
Experimental_info | RNAi_result | WBRNAi00091915 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00109092 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00109096 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00078331 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00015123 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00047569 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr10775 | ||||||||
Expr1018283 | |||||||||
Expr1151406 | |||||||||
Expr2015825 | |||||||||
Expr2034058 | |||||||||
Drives_construct | WBCnstr00017541 | ||||||||
WBCnstr00017542 | |||||||||
WBCnstr00035379 | |||||||||
Construct_product | WBCnstr00017541 | ||||||||
WBCnstr00017542 | |||||||||
WBCnstr00035379 | |||||||||
Microarray_results (19) | |||||||||
Expression_cluster (105) | |||||||||
Interaction (109) | |||||||||
Map_info | Map | X | Position | 11.4017 | Error | 0.089052 | |||
Positive | Positive_clone | F46G10 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4506 | |||||||
4661 | |||||||||
5082 | |||||||||
5542 | |||||||||
Pseudo_map_position | |||||||||
Reference (15) | |||||||||
Remark | Sequence connection from [Tissenbaum HA] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |