WormBase Tree Display for Gene: WBGene00004879

WBGene00004879 SMap: S_parent: Sequence: C48B6
  Identity: Version: 1
    Name: CGC_name: smg-1 Person_evidence: WBPerson261
      Sequence_name: C48B6.6
      Molecular_name: C48B6.6a
        C48B6.6a.1
        CE30258
        C48B6.6b
        CE53740
        C48B6.6b.1
      Other_name: mab-1
        CELE_C48B6.6 Accession_evidence: NDB BX284601
      Public_name: smg-1
    DB_info: Database (13)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:36 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info (12)
  Molecular_info: Corresponding_CDS: C48B6.6a
      C48B6.6b
    Corresponding_CDS_history: C48B6.6:wp126
      C48B6.6b:wp273
    Corresponding_transcript: C48B6.6a.1
      C48B6.6b.1
    Other_sequence (18)
    Associated_feature: WBsf664370
      WBsf664371
      WBsf664372
      WBsf664373
      WBsf984028
      WBsf1010005
      WBsf219650
      WBsf219651
  Experimental_info: RNAi_result (20)
    Expr_pattern: Expr1024290
      Expr1032418
      Expr1146716
      Expr2015907
      Expr2034140
    Construct_product: WBCnstr00007260
    Regulate_expr_cluster: WBPaper00053308:NMD(-)_downregulated_SMD-2_non-binding_ClassIV
      WBPaper00053308:NMD(-)_upregulated_SMD-2_non-binding_ClassIII
    Antibody: WBAntibody00000757
      WBAntibody00002206
    Microarray_results (29)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037950:all-neurons_embryo_enriched
      WBPaper00037950:AVA-neuron_embryo_enriched
      WBPaper00037950:GABAergic-motor-neurons_embryo_enriched
      WBPaper00038168:lin-15B(n744)_upregulated
      WBPaper00040420:ALM_PLM_enriched
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00044426:rotenone_24h_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(gk119)_downregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
      WBPaper00049920:Glucose-Diet_downregulated_N2
      WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050496:unc-39(hp701)_regulated
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051039:germline_enriched
      WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
      WBPaper00053814:25C_downregulated_PY79
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055103:thoc-5(wy822)_upregulated
      WBPaper00055226:ADR-2_target_N2
      WBPaper00055334:DLC-1_interacting
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00058691:set-2(bn129)_downregulated
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00060445:ikb-1(nr2027)_upregulated_L4
      WBPaper00060445:nfki-1(cer1)_upregulated_L4
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
      WBPaper00061527:gpb-1_3783-C48A7.2_22459
      WBPaper00061527:npp-8_4355-afd-1_4796
      WBPaper00061527:trcs-2_5724-R11A8.7_17645
      WBPaper00061753:csr-1(tor159)_downregulated_20C
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00062056:lin-36(we31)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00065225:nhr-42(tm1375)_upregulated_S.aureus-infected
      WBPaper00065975:P-body_vs_oocyte_depleted
      cgc4489_group_2
      cgc4489_group_9
      WBPaper00024671:AFD_AWB_vs_unsorted_upregulated
      WBPaper00025032:cluster_39
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00031832:slr-2_regulated
      WBPaper00032165:differentially_expressed_with_age_medoid_1
      WBPaper00034661:AgNPs_downregulated
      WBPaper00037901:GLD-1_mRNA_targets
      WBPaper00038231:Cry5B_1.5-fold_upregulated
      WBPaper00040823:alg-1(gk214)_downregulated
      WBPaper00041002:HF_3d_0.2mM_Down
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041002:HF_11d_2.0mM_Up
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00055435:AuNPs_downregulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
    Interaction: WBInteraction000000011
      WBInteraction000000043
      WBInteraction000000091
      WBInteraction000000330
      WBInteraction000000453
      WBInteraction000000454
      WBInteraction000000785
      WBInteraction000000845
      WBInteraction000001044
      WBInteraction000003188
      WBInteraction000005047
      WBInteraction000005297
      WBInteraction000028513
      WBInteraction000028765
      WBInteraction000029162
      WBInteraction000029166
      WBInteraction000029167
      WBInteraction000030776
      WBInteraction000031738
      WBInteraction000031739
      WBInteraction000052334
      WBInteraction000052892
      WBInteraction000126278
      WBInteraction000126453
      WBInteraction000126454
      WBInteraction000126739
      WBInteraction000126985
      WBInteraction000166252
      WBInteraction000166253
      WBInteraction000166254
      WBInteraction000166255
      WBInteraction000166256
      WBInteraction000166257
      WBInteraction000166258
      WBInteraction000166259
      WBInteraction000209197
      WBInteraction000292750
      WBInteraction000299219
      WBInteraction000313395
      WBInteraction000356594
      WBInteraction000381793
      WBInteraction000387260
      WBInteraction000402669
      WBInteraction000465437
      WBInteraction000500864
      WBInteraction000500869
      WBInteraction000500872
      WBInteraction000501295
      WBInteraction000501297
      WBInteraction000502140
      WBInteraction000502141
      WBInteraction000502142
      WBInteraction000503801
      WBInteraction000505149
      WBInteraction000517900
      WBInteraction000517901
      WBInteraction000519151
      WBInteraction000519160
      WBInteraction000525289
      WBInteraction000536769
      WBInteraction000536772
      WBInteraction000536773
      WBInteraction000540256
      WBInteraction000542477
      WBInteraction000556089
      WBInteraction000556091
      WBInteraction000556092
      WBInteraction000556093
      WBInteraction000556094
      WBInteraction000556276
  Map_info: Map: I Position: 1.48161 Error: 0.009583
    Well_ordered
    Positive: Positive_clone: C48B6 Inferred_automatically: From sequence, transcript, pseudogene data
        F56F2
    Mapping_data: 2_point: 328
      Multi_point: 204
        1889
        1890
        2089
        5509
  Reference (133)
  Remark: [Pulak R] n2088 may be a deficiency, nDf48
    Sequence connection from [O'Connor SL, Anderson RP] based on EMBL:AF149821
  Method: Gene