WormBase Tree Display for Gene: WBGene00004921
expand all nodes | collapse all nodes | view schema
WBGene00004921 | SMap | S_parent | Sequence | F31E8 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | snt-1 | Person_evidence | WBPerson508 | |||||
Sequence_name | F31E8.2 | ||||||||
Molecular_name | F31E8.2a | ||||||||
F31E8.2a.1 | |||||||||
CE02711 | |||||||||
F31E8.2b | |||||||||
CE28229 | |||||||||
F31E8.2b.1 | |||||||||
Other_name | ric-2 | ||||||||
unc-121 | |||||||||
syt1 | Accession_evidence | EMBL | AJ303369 | ||||||
syt-1 | |||||||||
CELE_F31E8.2 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | snt-1 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | snt | ||||||||
Allele (91) | |||||||||
Legacy_information | [Rand JB] uncoordinated, slight shrinker, small, slow-growing, resistant to cholinesterase inhibitors. | ||||||||
[C.elegansII] md125 : (pka ric-2) uncoordinated, slight shrinker, small, slow-growing, resistant to cholinesterase inhibitors; some pumping and defecation defects. OA2: ad596 (pka unc-121, Unc, worse when starved; ME2), n2665. Cloned: encodes synaptotagmin (54% identity to mammalian synaptotagmin) [Nonet et al. 1993; Nguyen et al. 1995; NM; RM] | |||||||||
Complementation_data | [Rand JB] complements unc-104(e1265), egl-27(n170), let-263(mn240) | ||||||||
Strain (13) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (41) | |||||||||
Ortholog (62) | |||||||||
Paralog | WBGene00004922 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00004923 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00004924 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00011682 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00004926 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00004925 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00004316 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00006306 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00020861 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | snt-1 encodes two proteins, SNT-1A and SNT-1B, orthologous to synaptotagmin; SNT-1 is required for synaptic vesicle exocytosis and neurotransmitter release as well as for synaptic vesicle recycling via clathrin-mediated endocytosis; accordingly, snt-1 activity is required for a variety of behaviors including pharyngeal pumping, locomotion, and defecation; SNT-1A and SNT-1B isoforms are expressed in neurons, with SNT-1A typically expressed at higher levels, and in a greater number of neurons, than SNT-1B; in addition, SNT-1B is exclusively expressed in the excretory duct cell and a group of tail neurons including DVB, a GABAergic neuron required for defecation. | Paper_evidence | WBPaper00001709 | |||||
WBPaper00001750 | |||||||||
WBPaper00002316 | |||||||||
WBPaper00029143 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 16 Apr 2007 00:00:00 | ||||||||
Automated_description | Enables calcium ion sensor activity and calcium-dependent phospholipid binding activity. Involved in several processes, including defecation; regulation of pharyngeal pumping; and synaptic vesicle endocytosis. Located in synaptic vesicle. Expressed in several structures, including excretory gland cell; gonad; nervous system; pharyngeal gland cell; and rectal gland cell. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 7. Is an ortholog of human SYT1 (synaptotagmin 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0110659 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11510) | ||||
DOID:3635 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11510) | ||||||
Molecular_info | Corresponding_CDS | F31E8.2a | |||||||
F31E8.2b | |||||||||
Corresponding_transcript | F31E8.2a.1 | ||||||||
F31E8.2b.1 | |||||||||
Other_sequence | MI03396 | ||||||||
AS10851 | |||||||||
HS00323 | |||||||||
AS10727 | |||||||||
AS12687 | |||||||||
AS10904 | |||||||||
ACC09619_1 | |||||||||
AS10812 | |||||||||
HSC00659_1 | |||||||||
Tcol_isotig13120 | |||||||||
EY473726.1 | |||||||||
HBC16849_1 | |||||||||
HBC14703_1 | |||||||||
Oden_isotig19453 | |||||||||
FC549136.1 | |||||||||
XIC01345_1 | |||||||||
Dviv_isotig23046 | |||||||||
NBC03575_1 | |||||||||
OCC00009_1 | |||||||||
Acan_isotig08667 | |||||||||
EH005357.1 | |||||||||
EY462925.1 | |||||||||
HS01419 | |||||||||
OOC03685_1 | |||||||||
AS02845 | |||||||||
TSC04915_1 | |||||||||
EX015035.1 | |||||||||
ASC11813_1 | |||||||||
AI363551.1 | |||||||||
Hbac_isotig06652 | |||||||||
JI238718.1 | |||||||||
TSC05527_1 | |||||||||
SS02869 | |||||||||
JI181478.1 | |||||||||
Tcir_isotig30994 | |||||||||
FC540460.1 | |||||||||
EX913638.1 | |||||||||
ACC15582_1 | |||||||||
MIC02923_1 | |||||||||
EY466243.1 | |||||||||
EY461416.1 | |||||||||
TS00057 | |||||||||
NB08898 | |||||||||
FC548347.1 | |||||||||
EY466761.1 | |||||||||
AIC00259_1 | |||||||||
EY462698.1 | |||||||||
FC543606.1 | |||||||||
MJC03079_1 | |||||||||
FE911314.1 | |||||||||
MPC00168_1 | |||||||||
FG351955.1 | |||||||||
AI132733.1 | |||||||||
MJ03960 | |||||||||
EX010091.1 | |||||||||
SSC02101_1 | |||||||||
OVC00383_1 | |||||||||
JI475285.1 | |||||||||
XI03656 | |||||||||
MP01029 | |||||||||
TSC05629_1 | |||||||||
BE239140.1 | |||||||||
TS00285 | |||||||||
HSC00336_1 | |||||||||
Associated_feature (15) | |||||||||
Experimental_info | RNAi_result | WBRNAi00089992 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00046026 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00090310 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092941 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00112395 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00027612 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00076365 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00022346 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00089812 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00090151 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (11) | |||||||||
Drives_construct | WBCnstr00003269 | ||||||||
WBCnstr00005350 | |||||||||
WBCnstr00005351 | |||||||||
WBCnstr00009600 | |||||||||
WBCnstr00009601 | |||||||||
WBCnstr00017690 | |||||||||
WBCnstr00035321 | |||||||||
WBCnstr00038765 | |||||||||
WBCnstr00038766 | |||||||||
Construct_product | WBCnstr00001653 | ||||||||
WBCnstr00005350 | |||||||||
WBCnstr00005351 | |||||||||
WBCnstr00017690 | |||||||||
WBCnstr00019062 | |||||||||
WBCnstr00021442 | |||||||||
WBCnstr00035321 | |||||||||
WBCnstr00038765 | |||||||||
WBCnstr00038766 | |||||||||
Antibody | WBAntibody00000070 | ||||||||
WBAntibody00000152 | |||||||||
WBAntibody00000347 | |||||||||
WBAntibody00000730 | |||||||||
WBAntibody00000906 | |||||||||
WBAntibody00001655 | |||||||||
Microarray_results (31) | |||||||||
Expression_cluster (227) | |||||||||
Interaction (77) | |||||||||
Map_info | Map | II | Position | 0.115793 | Error | 0.000262 | |||
Well_ordered | |||||||||
Positive | Positive_clone | F31E8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
F58D4 | |||||||||
K10B7 | |||||||||
Mapping_data | 2_point | 6025 | |||||||
6167 | |||||||||
Multi_point | 2072 | ||||||||
2073 | |||||||||
2422 | |||||||||
2423 | |||||||||
2424 | |||||||||
Pos_neg_data (18) | |||||||||
Reference (115) | |||||||||
Remark | [Rand JB] structural gene for synaptotagmin (cosmid hybridization by Nonet M). Null alleles viable. 14 additional md alleles exist. | ||||||||
Method | Gene |