WormBase Tree Display for Gene: WBGene00006372
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| WBGene00006372 | Evidence | Paper_evidence | WBPaper00003608 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F48F7 | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | syx-2 | Person_evidence | WBPerson3132 | |||||
| WBPerson203 | |||||||||
| Sequence_name | F48F7.2 | ||||||||
| Molecular_name | F48F7.2 | ||||||||
| F48F7.2.1 | |||||||||
| CE37520 | |||||||||
| Other_name | syn-2 | Person_evidence | WBPerson203 | ||||||
| CELE_F48F7.2 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | syx-2 | ||||||||
| DB_info | Database | AceView | gene | XO581 | |||||
| WormQTL | gene | WBGene00006372 | |||||||
| WormFlux | gene | WBGene00006372 | |||||||
| NDB | locus_tag | CELE_F48F7.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006372|UniProtKB=Q20574 | |||||||
| family | PTHR19957 | ||||||||
| NCBI | gene | 181505 | |||||||
| RefSeq | protein | NM_077922.7 | |||||||
| SwissProt | UniProtAcc | Q20574 | |||||||
| UniProt_GCRP | UniProtAcc | Q20574 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 16 Apr 2010 14:03:06 | WBPerson2970 | Name_change | CGC_name | syx-2 | ||||
| Other_name | syn-2 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | syx | ||||||||
| Allele (49) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (18) | |||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00006371 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00006798 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006373 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022534 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009478 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012150 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006374 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable SNAP receptor activity and SNARE binding activity. Involved in short-term memory. Predicted to be located in presynaptic active zone membrane and synaptic vesicle. Predicted to be part of SNARE complex. Expressed in several structures, including head neurons; hypodermis; neurons; and ventral cord neurons. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F48F7.2 | |||||||
| Corresponding_CDS_history | F48F7.2:wp83 | ||||||||
| F48F7.2:wp132 | |||||||||
| Corresponding_transcript | F48F7.2.1 | ||||||||
| Other_sequence | CRC09390_1 | ||||||||
| Acan_isotig09067 | |||||||||
| Tcir_isotig06499 | |||||||||
| Oden_isotig19457 | |||||||||
| CR03347 | |||||||||
| Associated_feature | WBsf648699 | ||||||||
| WBsf718764 | |||||||||
| WBsf1007783 | |||||||||
| WBsf1007784 | |||||||||
| WBsf1007785 | |||||||||
| WBsf1024332 | |||||||||
| WBsf1024333 | |||||||||
| WBsf236621 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00032495 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00015260 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047762 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00069906 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00063808 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00105994 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr307 | ||||||||
| Expr15007 | |||||||||
| Expr1025428 | |||||||||
| Expr1032570 | |||||||||
| Expr1151595 | |||||||||
| Expr2017192 | |||||||||
| Expr2035328 | |||||||||
| Drives_construct | WBCnstr00037917 | ||||||||
| WBCnstr00041873 | |||||||||
| Construct_product | WBCnstr00037917 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (213) | |||||||||
| Interaction | WBInteraction000569520 | ||||||||
| WBInteraction000579019 | |||||||||
| WBInteraction000579020 | |||||||||
| WBInteraction000579021 | |||||||||
| Map_info | Map | X | Position | 15.8617 | |||||
| Positive | Positive_clone | F48F7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003608 | ||||||||
| WBPaper00003678 | |||||||||
| WBPaper00011049 | |||||||||
| WBPaper00029049 | |||||||||
| WBPaper00048988 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059987 | |||||||||
| WBPaper00066137 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
