WormBase Tree Display for Gene: WBGene00006409

WBGene00006409 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: C09G9
  Identity: Version: 2
    Name: CGC_name: hdl-2 Person_evidence: WBPerson260
      Sequence_name: C09G9.4
      Molecular_name: C09G9.4
        C09G9.4.1
        CE40800
      Other_name: tag-19
        CELE_C09G9.4 Accession_evidence: NDB BX284604
      Public_name: hdl-2
    DB_info: Database: AceView gene 4J641
        WormQTL gene WBGene00006409
        WormFlux gene WBGene00006409
        NDB locus_tag CELE_C09G9.4
        Panther gene CAEEL|WormBase=WBGene00006409|UniProtKB=Q17874
          family PTHR11999
        NCBI gene 182464
        RefSeq protein NM_069138.5
        TREEFAM TREEFAM_ID TF313863
        TrEMBL UniProtAcc Q17874
        UniProt_GCRP UniProtAcc Q17874
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:40 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 02 Mar 2012 16:42:47 WBPerson2970 Name_change: CGC_name: hdl-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: hdl
    Allele (39)
    Strain: WBStrain00035590
    In_cluster: conserved_RDE-1_cluster
    RNASeq_FPKM (74)
    GO_annotation: 00059513
      00059514
      00059515
      00059516
      00114035
      00114036
      00114037
      00114038
      00114039
    Ortholog (25)
    Paralog: WBGene00000239 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00001839 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006562 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00015467 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004981 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006418 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006762 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00007593 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00022427 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: tag-19 superficially resembles aromatic-L-amino-acid/L-histidine decarboxylases; however, it is distantly related, being no closer to them than to glutamine decarboxylase/sphingosinge lyase (e.g., tag-38, spl-1); tag-19 thus might be termed a Pyridoxal-phosphate (PLP) dependent decarboxylase-like protei, but is missing the absolutely conserved Lys residue of all PLP-DCs (hence the -like would be needed); tag-19 is dispensable in mass RNAi assays. Paper_evidence: WBPaper00006395
            WBPaper00025054
          Person_evidence: WBPerson384
          Curator_confirmed: WBPerson567
          Date_last_updated: 05 May 2005 00:00:00
      Automated_description: Predicted to enable carboxy-lyase activity. Predicted to be involved in amino acid metabolic process. Predicted to be located in cytoplasm. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C09G9.4
    Corresponding_CDS_history: C09G9.4:wp109
      C09G9.4:wp173
    Corresponding_transcript: C09G9.4.1
    Associated_feature: WBsf997300
      WBsf1017892
      WBsf228751
  Experimental_info: RNAi_result: WBRNAi00040246 Inferred_automatically: RNAi_primary
      WBRNAi00010555 Inferred_automatically: RNAi_primary
      WBRNAi00028745 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1029162
      Expr1144316
      Expr2012391
      Expr2030627
    Drives_construct: WBCnstr00037913
    Construct_product: WBCnstr00037913
    Microarray_results (18)
    Expression_cluster (146)
    Interaction (31)
  Map_info: Map: IV Position: 3.98949 Error: 0.002163
    Positive: Positive_clone: C09G9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00024422
  Remark: Gene name created from parsing 'genotype' field from CGC strain information CGC_data_submission
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene