WormBase Tree Display for Gene: WBGene00006517
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| WBGene00006517 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 4 | |||||||
| Name | CGC_name | madd-3 | Person_evidence | WBPerson1820 | |||||
| Sequence_name | E02H4.3 | ||||||||
| Molecular_name (22) | |||||||||
| Other_name | tag-172 | Person_evidence | WBPerson201 | ||||||
| CELE_E02H4.3 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | madd-3 | ||||||||
| DB_info | Database (14) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 05 Oct 2005 17:16:52 | WBPerson2970 | Event | Acquires_merge | WBGene00008461 | ||||
| Name_change | Sequence_name | E02H4.3 | |||||||
| 3 | 28 Apr 2014 11:35:37 | WBPerson2970 | Name_change | CGC_name | madd-3 | ||||
| Other_name | tag-172 | ||||||||
| 4 | 17 Sep 2018 14:44:56 | WBPerson1983 | Event | Acquires_merge | WBGene00007532 | ||||
| Acquires_merge | WBGene00008461 | ||||||||
| WBGene00007532 | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | madd | ||||||||
| Allele (220) | |||||||||
| Strain | WBStrain00035873 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (19) | |||||||||
| Ortholog (54) | |||||||||
| Paralog | WBGene00013727 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00185089 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022218 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00001994 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00003149 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00003150 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in regulation of RNA splicing. Predicted to be located in nucleus. Expressed in anal depressor muscle; anal sphincter muscle; body wall musculature; and vulval muscle. Is an ortholog of human CLK2 (CDC like kinase 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | E02H4.3a | |||||||
| E02H4.3b | |||||||||
| E02H4.3c | |||||||||
| E02H4.3d | |||||||||
| E02H4.3e | |||||||||
| E02H4.3f | |||||||||
| Corresponding_CDS_history | E02H4.3:wp83 | ||||||||
| E02H4.3b:wp267 | |||||||||
| Corresponding_transcript | E02H4.3a.1 | ||||||||
| E02H4.3b.1 | |||||||||
| E02H4.3c.1 | |||||||||
| E02H4.3c.2 | |||||||||
| E02H4.3d.1 | |||||||||
| E02H4.3e.1 | |||||||||
| E02H4.3f.1 | |||||||||
| E02H4.3f.2 | |||||||||
| E02H4.3f.3 | |||||||||
| E02H4.3f.4 | |||||||||
| Other_sequence (52) | |||||||||
| Associated_feature | WBsf654566 | ||||||||
| WBsf671252 | |||||||||
| WBsf671253 | |||||||||
| WBsf671254 | |||||||||
| WBsf671255 | |||||||||
| WBsf1007869 | |||||||||
| WBsf1007870 | |||||||||
| WBsf1007871 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00043606 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00040369 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012649 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (13) | |||||||||
| Drives_construct | WBCnstr00012327 | ||||||||
| WBCnstr00033671 | |||||||||
| WBCnstr00037806 | |||||||||
| WBCnstr00037807 | |||||||||
| WBCnstr00037889 | |||||||||
| Construct_product | WBCnstr00033671 | ||||||||
| WBCnstr00037806 | |||||||||
| WBCnstr00037889 | |||||||||
| Microarray_results (40) | |||||||||
| Expression_cluster (176) | |||||||||
| Interaction (60) | |||||||||
| Map_info | Map | X | Position | 16.676 | Error | 0.001884 | |||
| Positive | Positive_clone | E02H4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5538 | |||||||
| 4254 | |||||||||
| 4606 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027258 | ||||||||
| WBPaper00031003 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049528 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
