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WormBase Tree Display for Gene: WBGene00006750

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Name Class

WBGene00006750SMapS_parentSequenceT10A3
IdentityVersion1
NameCGC_nameunc-10Person_evidenceWBPerson261
Sequence_nameT10A3.1
Molecular_name (18)
Other_namerim-1
RimPaper_evidenceWBPaper00013595
CELE_T10A3.1Accession_evidenceNDBBX284606
Public_nameunc-10
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:41WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
Reference_alleleWBVar00142961
Allele (153)
Legacy_informatione102 : weak coiler tends to back loopy movement in reverse; fairly active slightly small and thin. ES3 ME2. NA2 (e126).
[C.elegansII] e102 : weak coiler, tends to back, loopy movement in reverse; fairly active; slightly small and thin; Ric. ES3 ME2. OA1: e126. [Brenner 1974; Nguyen et al. 1995]
[Nonet M] unc-10(e102) was phenotypically rescued by both cosmid C34H12 and a 16 kb BamHI/KpnI subclone of this cosmid that contains effectively only the rim-1 gene. The rim-1 gene (rim for Rab Interacting Molecule) is the combined genefinder products T10A3.1 and K03A1.3 (with several mistakes in the prediction by genefinder). Furthermore, unc-10(md330) and unc-10(md1117) both contain deletions of the vast majority of the rim-1 gene. Specifically, md1117 deleted 8.6 kb that extends from approximately 500 bp 5' of the atg to 200 bp 3' of the TAA of the rim-1 gene product.
[Nonet M] Encodes Rab-3 interacting protein.
StrainWBStrain00002752
WBStrain00027194
WBStrain00029061
WBStrain00004100
WBStrain00005485
WBStrain00005508
WBStrain00005509
WBStrain00051853
RNASeq_FPKM (74)
GO_annotation (32)
OrthologWBGene00051358Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00032220Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00139400Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00135410Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00232519Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g3825Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g1828Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g2185Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g20017Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g2836Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g20577Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g20578Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g5642Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g5643Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g20645Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g4509Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g21270Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_09484.g22094Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-unc-10Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g12505Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00022.g1323Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_00207Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_024741Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g01557Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g13176Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0202100Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g19374Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00238655Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00238656Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00089921Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00257102Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00290044Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0053547Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-040426-1656Danio rerioFrom_analysisOrthoFinder
OrthoInspector
PhylomeDB
ZFIN:ZDB-GENE-060503-893Danio rerioFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
Panther
ZFIN:ZDB-GENE-060503-788Danio rerioFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
PhylomeDB
ZFIN:ZDB-GENE-101223-4Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-110103-1Danio rerioFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
Panther
PhylomeDB
ZFIN:ZDB-GENE-090312-135Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:17283Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:21292Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
PhylomeDB
HGNC:17282Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
HGNC:16183Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
Panther
MGI:2152971Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
MGI:2152972Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
MGI:2674366Mus musculusFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
Panther
MGI:2443331Mus musculusFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
PhylomeDB
RGD:628762Rattus norvegicusFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
PhylomeDB
RGD:620000Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:620001Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:628695Rattus norvegicusFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
Panther
PhylomeDB
Structured_descriptionConcise_descriptionunc-10 encodes a protein with zinc-finger, Q/N-rich, PDZ, and C2 domains that is homologous to vertebrate Rim1, a presynaptic protein which binds, and effects the activity of, synaptic vesicle-associated GTP-Rab3; UNC-10 is required for normal locomotion and synaptic transmission, and localizes to a subdomain of presynaptic termini, where it probably acts to regulate the priming step of presynaptic vesicle fusion by promoting conformational changes in syntaxin.Paper_evidenceWBPaper00002487
WBPaper00004891
WBPaper00005068
WBPaper00012788
WBPaper00012830
WBPaper00012882
WBPaper00012897
WBPaper00013003
Curator_confirmedWBPerson1843
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnables small GTPase binding activity. Involved in several processes, including chemical synaptic transmission; defecation; and positive regulation of cholinergic synaptic transmission. Located in axon and presynaptic active zone. Expressed in dorsal nerve cord; nerve ring; nervous system; uv1; and ventral nerve cord. Is an ortholog of human RIMS1 (regulating synaptic membrane exocytosis 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST10A3.1a
T10A3.1b
T10A3.1c
T10A3.1d
T10A3.1e
T10A3.1f
Corresponding_transcriptT10A3.1a.1
T10A3.1b.1
T10A3.1c.1
T10A3.1d.1
T10A3.1e.1
T10A3.1f.1
Other_sequence (30)
Associated_feature (22)
Experimental_infoRNAi_result (19)
Expr_patternChronogram1591
Expr2418
Expr14780
Expr15235
Expr15236
Expr1017493
Expr1032824
Expr1156587
Expr2017837
Expr2035973
Drives_constructWBCnstr00003280
WBCnstr00034173
Construct_product (11)
AntibodyWBAntibody00000412
WBAntibody00000866
WBAntibody00001456
WBAntibody00001656
WBAntibody00001729
WBAntibody00002171
Microarray_results (30)
Expression_cluster (208)
Interaction (82)
Map_infoMapXPosition-1.7816Error0.001118
Well_ordered
PositivePositive_cloneC34H12
T10A3Person_evidenceWBPerson451
Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_data2_point147
182
3912
3913
6198
Multi_point (23)
Pos_neg_data (13)
ReferenceWBPaper00000031
WBPaper00000608
WBPaper00001218
WBPaper00001443
WBPaper00001558
WBPaper00001709
WBPaper00002195
WBPaper00002487
WBPaper00002590
WBPaper00004891
WBPaper00005423
WBPaper00005528
WBPaper00005543
WBPaper00006049
WBPaper00010018
WBPaper00010864
WBPaper00011509
WBPaper00013595
WBPaper00013752
WBPaper00013979
WBPaper00014706
WBPaper00014723
WBPaper00014761
WBPaper00014791
WBPaper00015253
WBPaper00015500
WBPaper00015812
WBPaper00016723
WBPaper00017184
WBPaper00018073
WBPaper00019199
WBPaper00019330
WBPaper00022646
WBPaper00023487
WBPaper00023973
WBPaper00024247
WBPaper00024525
WBPaper00025638
WBPaper00026015
WBPaper00026196
WBPaper00026618
WBPaper00026667
WBPaper00026711
WBPaper00026785
WBPaper00026941
WBPaper00027296
WBPaper00027304
WBPaper00027305
WBPaper00027751
WBPaper00028379
WBPaper00028808
WBPaper00028886
WBPaper00030810
WBPaper00030844
WBPaper00030845
WBPaper00030995
WBPaper00031137
WBPaper00031717
WBPaper00032122
WBPaper00032233
WBPaper00032252
WBPaper00032389
WBPaper00034738
WBPaper00035074
WBPaper00035163
WBPaper00035356
WBPaper00035492
WBPaper00036179
WBPaper00037731
WBPaper00038253
WBPaper00038491
WBPaper00039282
WBPaper00041950
WBPaper00043415
WBPaper00043908
WBPaper00044074
WBPaper00045955
WBPaper00048069
WBPaper00048427
WBPaper00052130
WBPaper00052816
WBPaper00055090
WBPaper00055787
WBPaper00056826
WBPaper00057348
WBPaper00057647
WBPaper00057845
WBPaper00058534
WBPaper00059613
WBPaper00061027
WBPaper00061401
WBPaper00061408
WBPaper00061748
WBPaper00061818
WBPaper00062568
WBPaper00063848
WBPaper00063852
WBPaper00064182
WBPaper00064323
WBPaper00064639
WBPaper00064844
WBPaper00064911
WBPaper00064934
WBPaper00064955
WBPaper00065105
WBPaper00065262
WBPaper00065342
WBPaper00065360
RemarkSequence connection from [Koushika SP, Nonet M]
Other name from JA Hodgkin, 09/02/2002
unc-10 is the same as rim-1 and therefore rim-1 was merged into unc-10 based on advice from JAH
MethodGene