WormBase Tree Display for Gene: WBGene00007200
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| WBGene00007200 | SMap | S_parent | Sequence | B0513 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | vamp-8 | Person_evidence | WBPerson3132 | |||||
| Sequence_name | B0513.9 | ||||||||
| Molecular_name | B0513.9a | ||||||||
| B0513.9a.1 | |||||||||
| CE28426 | |||||||||
| B0513.9b | |||||||||
| CE39665 | |||||||||
| B0513.9b.1 | |||||||||
| Other_name | CELE_B0513.9 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | vamp-8 | ||||||||
| DB_info | Database | AceView | gene | 4O626 | |||||
| WormQTL | gene | WBGene00007200 | |||||||
| WormFlux | gene | WBGene00007200 | |||||||
| NDB | locus_tag | CELE_B0513.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00007200|UniProtKB=Q95QZ1 | |||||||
| family | PTHR21136 | ||||||||
| NCBI | gene | 178349 | |||||||
| RefSeq | protein | NM_001047440.5 | |||||||
| NM_001047439.2 | |||||||||
| TREEFAM | TREEFAM_ID | TF320419 | |||||||
| TrEMBL | UniProtAcc | Q95QZ1 | |||||||
| Q2EEN5 | |||||||||
| UniProt_GCRP | UniProtAcc | Q95QZ1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:47 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 17 Feb 2012 16:57:01 | WBPerson2970 | Name_change | CGC_name | vamp-8 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vamp | ||||||||
| Allele (82) | |||||||||
| Strain | WBStrain00001352 | ||||||||
| WBStrain00037837 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00080301 | ||||||||
| 00080302 | |||||||||
| 00080303 | |||||||||
| 00080304 | |||||||||
| 00080305 | |||||||||
| 00080306 | |||||||||
| 00115420 | |||||||||
| 00115421 | |||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00022077 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WormBase-Compara | |||||||||
| WBGene00004897 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004898 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004899 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00014084 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00015164 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00018853 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00044062 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in exocytosis and vesicle fusion. Predicted to be located in membrane. Predicted to be part of SNARE complex. Is an ortholog of human VAMP8 (vesicle associated membrane protein 8). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0513.9a | |||||||
| B0513.9b | |||||||||
| Corresponding_transcript | B0513.9a.1 | ||||||||
| B0513.9b.1 | |||||||||
| Other_sequence | Oden_isotig15185 | ||||||||
| HBC14878_1 | |||||||||
| EX916089.1 | |||||||||
| Oden_isotig15184 | |||||||||
| Hbac_isotig05693 | |||||||||
| CJC12596_1 | |||||||||
| EX916019.1 | |||||||||
| Associated_feature | WBsf652358 | ||||||||
| WBsf231171 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00039163 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr5082 | ||||||||
| Expr1012721 | |||||||||
| Expr1143314 | |||||||||
| Expr2017958 | |||||||||
| Expr2036094 | |||||||||
| Drives_construct | WBCnstr00002245 | ||||||||
| WBCnstr00033924 | |||||||||
| Construct_product | WBCnstr00016315 | ||||||||
| WBCnstr00033924 | |||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (156) | |||||||||
| Interaction (55) | |||||||||
| Map_info | Map | IV | Position | 10.8857 | |||||
| Positive | Positive_clone | B0513 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
