WormBase Tree Display for Gene: WBGene00044062
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WBGene00044062 | Evidence | Inferred_automatically | Gene name parsed from strain object: VC690 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | T14D7 | ||||||
Identity | Version | 3 | |||||||
Name | CGC_name | snb-6 | Person_evidence | WBPerson3132 | |||||
Sequence_name | T14D7.3 | ||||||||
Molecular_name | T14D7.3 | ||||||||
T14D7.3.1 | |||||||||
CE13646 | |||||||||
Other_name | tag-212 | Person_evidence | WBPerson201 | ||||||
CELE_T14D7.3 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | snb-6 | ||||||||
DB_info | Database | AceView | gene | 2J146 | |||||
WormQTL | gene | WBGene00044062 | |||||||
WormFlux | gene | WBGene00044062 | |||||||
NDB | locus_tag | CELE_T14D7.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00044062|UniProtKB=Q94057 | |||||||
family | PTHR45701 | ||||||||
NCBI | gene | 188497 | |||||||
RefSeq | protein | NM_063486.3 | |||||||
TrEMBL | UniProtAcc | Q94057 | |||||||
UniProt_GCRP | UniProtAcc | Q94057 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 22 Dec 2004 16:59:41 | WBPerson2970 | Event | Created | |||
2 | 05 Oct 2005 17:16:53 | WBPerson2970 | Event | Acquires_merge | WBGene00011769 | ||||
Name_change | Sequence_name | T14D7.3 | |||||||
3 | 26 Mar 2010 11:10:21 | WBPerson2970 | Name_change | CGC_name | snb-6 | ||||
Other_name | tag-212 | ||||||||
Acquires_merge | WBGene00011769 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | snb | ||||||||
Allele (19) | |||||||||
Strain | WBStrain00035982 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00086968 | ||||||||
00086969 | |||||||||
00086970 | |||||||||
00086971 | |||||||||
00086972 | |||||||||
00086973 | |||||||||
00145964 | |||||||||
00145965 | |||||||||
Ortholog (25) | |||||||||
Paralog | WBGene00004899 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
WormBase-Compara | |||||||||
WBGene00014084 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
WormBase-Compara | |||||||||
WBGene00004897 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00004898 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00007200 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00015164 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00018853 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00022077 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Predicted to enable SNAP receptor activity and syntaxin binding activity. Predicted to be involved in vesicle fusion. Predicted to be located in plasma membrane. Predicted to be part of SNARE complex. Is an ortholog of human VAMP7 (vesicle associated membrane protein 7). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T14D7.3 | |||||||
Corresponding_transcript | T14D7.3.1 | ||||||||
Other_sequence | CJC02343_1 | ||||||||
Associated_feature | WBsf223561 | ||||||||
WBsf223562 | |||||||||
Experimental_info | RNAi_result | WBRNAi00018709 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00035566 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00023597 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00053321 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00023826 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00023315 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00024114 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00103529 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1013308 | ||||||||
Expr1156906 | |||||||||
Expr2034175 | |||||||||
Drives_construct | WBCnstr00037815 | ||||||||
Construct_product | WBCnstr00037815 | ||||||||
Microarray_results (17) | |||||||||
Expression_cluster (127) | |||||||||
Interaction (110) | |||||||||
Map_info | Map | II | Position | 0.907557 | Error | 0.001416 | |||
Positive | Positive_clone | T14D7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 5550 | |||||||
4635 | |||||||||
4659 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00065044 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |