WormBase Tree Display for Gene: WBGene00007620
expand all nodes | collapse all nodes | view schema
| WBGene00007620 | SMap | S_parent | Sequence | C16C2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ocrl-1 | Person_evidence | WBPerson298 | |||||
| Sequence_name | C16C2.3 | ||||||||
| Molecular_name | C16C2.3a | ||||||||
| C16C2.3a.1 | |||||||||
| CE53742 | |||||||||
| C16C2.3b | |||||||||
| CE41202 | |||||||||
| C16C2.3a.2 | |||||||||
| C16C2.3b.1 | |||||||||
| Other_name | CELE_C16C2.3 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | ocrl-1 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00007620 | |||||
| WormFlux | gene | WBGene00007620 | |||||||
| NDB | locus_tag | CELE_C16C2.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00007620|UniProtKB=O17590 | |||||||
| family | PTHR11200 | ||||||||
| NCBI | gene | 172822 | |||||||
| RefSeq | protein | NM_001128949.5 | |||||||
| NM_001375161.2 | |||||||||
| TREEFAM | TREEFAM_ID | TF317034 | |||||||
| TrEMBL | UniProtAcc | O17590 | |||||||
| A5Z2U3 | |||||||||
| UniProt_GCRP | UniProtAcc | O17590 | |||||||
| OMIM | gene | 300535 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 04 Nov 2004 10:48:41 | WBPerson2970 | Name_change | CGC_name | ocrl-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ocrl | ||||||||
| Allele (145) | |||||||||
| Strain | WBStrain00036713 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (18) | |||||||||
| Contained_in_operon | CEOP1560 | ||||||||
| Ortholog (43) | |||||||||
| Paralog | WBGene00006763 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00012016 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00086546 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00007912 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00009264 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00012353 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | The C16C2.3 gene encodes an inositol-1,4,5-triphosphate 5-phosphatase homolog that is homologous to human OCRL. | Paper_evidence | WBPaper00004103 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity. Predicted to be involved in phosphatidylinositol dephosphorylation and positive regulation of flagellated sperm motility. Predicted to be located in several cellular components, including neuronal cell body; nucleus; and plasma membrane bounded cell projection. Human ortholog(s) of this gene implicated in Dent disease and oculocerebrorenal syndrome. Is an ortholog of human INPP5B (inositol polyphosphate-5-phosphatase B). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0050699 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8108) | ||||
| DOID:1056 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8108) | ||||||
| Molecular_info | Corresponding_CDS | C16C2.3a | |||||||
| C16C2.3b | |||||||||
| Corresponding_CDS_history | C16C2.3:wp177 | ||||||||
| C16C2.3a:wp273 | |||||||||
| Corresponding_transcript | C16C2.3a.1 | ||||||||
| C16C2.3a.2 | |||||||||
| C16C2.3b.1 | |||||||||
| Other_sequence (19) | |||||||||
| Associated_feature (22) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00002957 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00099097 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107820 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107818 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00002959 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040693 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107819 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1028022 | ||||||||
| Expr1033286 | |||||||||
| Expr1144734 | |||||||||
| Expr2014600 | |||||||||
| Expr2032833 | |||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (98) | |||||||||
| Interaction (15) | |||||||||
| Map_info | Map | I | Position | 3.864 | Error | 0.001621 | |||
| Positive | Positive_clone | C16C2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00040857 | |||||||||
| WBPaper00050403 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062045 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
