WormBase Tree Display for Gene: WBGene00008206
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| WBGene00008206 | SMap | S_parent | Sequence | C49F5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | set-6 | Person_evidence | WBPerson1730 | |||||
| WBPerson268 | |||||||||
| WBPerson632 | |||||||||
| Sequence_name | C49F5.2 | ||||||||
| Molecular_name | C49F5.2 | ||||||||
| C49F5.2.1 | |||||||||
| CE31454 | |||||||||
| Other_name | CELE_C49F5.2 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | set-6 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 03 May 2007 10:33:07 | WBPerson2970 | Name_change | CGC_name | set-6 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | set | ||||||||
| Allele (66) | |||||||||
| Strain | WBStrain00027555 | ||||||||
| WBStrain00027556 | |||||||||
| WBStrain00037496 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (43) | |||||||||
| Paralog (20) | |||||||||
| Structured_description | Concise_description | set-6 encodes a putative histone H3 lysine-9 methyltransferase; SET-6 has no non-nematode orthologs, but several paralogs (SET-13, SET-15, SET-19, SET-20, SET-21, and SET-32); neither set-6(tm1611) nor set-6(RNAi) have any obvious phenotypes. | Paper_evidence | WBPaper00030864 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 11 Oct 2007 00:00:00 | ||||||||
| Automated_description | Enables histone H3K9 dimethyltransferase activity and histone H3K9 trimethyltransferase activity. Involved in epigenetic regulation of gene expression. Part of chromatin. Expressed in embryonic cell; gonad; muscle cell; nervous system; and sperm. Is an ortholog of human SUV39H2 (SUV39H2 histone lysine methyltransferase). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C49F5.2 | |||||||
| Corresponding_CDS_history | C49F5.2:wp83 | ||||||||
| Corresponding_transcript | C49F5.2.1 | ||||||||
| Associated_feature | WBsf654453 | ||||||||
| WBsf671066 | |||||||||
| WBsf1007148 | |||||||||
| WBsf1023954 | |||||||||
| WBsf238023 | |||||||||
| WBsf238024 | |||||||||
| WBsf238025 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00042808 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00086719 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012145 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113440 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091517 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12975 | ||||||||
| Expr14375 | |||||||||
| Expr14975 | |||||||||
| Expr1021091 | |||||||||
| Expr1033565 | |||||||||
| Expr1146788 | |||||||||
| Expr2015782 | |||||||||
| Expr2034015 | |||||||||
| Drives_construct | WBCnstr00033156 | ||||||||
| WBCnstr00041827 | |||||||||
| Construct_product | WBCnstr00033156 | ||||||||
| WBCnstr00041827 | |||||||||
| Regulate_expr_cluster | WBPaper00059356:BAZ-2_SET-6_interacting | ||||||||
| WBPaper00059356:set-6(ok2195)_baz-2(tm0235)_regulated | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (84) | |||||||||
| Interaction (13) | |||||||||
| Map_info | Map | X | Position | 6.83564 | Error | 0.016397 | |||
| Positive | Positive_clone | C49F5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026067 | ||||||||
| WBPaper00030864 | |||||||||
| WBPaper00036383 | |||||||||
| WBPaper00038372 | |||||||||
| WBPaper00039449 | |||||||||
| WBPaper00045125 | |||||||||
| WBPaper00059356 | |||||||||
| WBPaper00064543 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
